PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHM99413.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 396aa    MW: 44107.3 Da    PI: 9.2178
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHM99413.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.21.9e-15238284455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h++ ErrRRd+iN+++ eL++l+P++      K +Ka++L ++++Y+k+Lq
  KHM99413.1 238 VHKQSERRRRDKINQRMKELQKLVPNS-----SKTDKASMLDEVIQYMKQLQ 284
                 699***********************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.473234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-18237307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-13238284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.26E-16239288No hitNo description
Gene3DG3DSA:4.10.280.102.4E-17239291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-17240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MSQRVPNCDV DDNNNIPTTT KIPLLPNFNF ISHEVPMLGY QAAELPCKKG QPSTYKGSHG  60
NLTSTWDKPR TSGGTLESIV SQHVSENRYK LVTMDALVPC SEQQSTQKAV VSERLDACGK  120
SRFPRVVAQE EVEKRAGVVA RGTRGTTTLE LGGCKDWSVS GSETCRRELS VTFNSATKGS  180
PENTTCSGKQ CTGTTTNDDR DSISHRISQG EVPDEDYKAT KVDRSSGSNK RIKANSVVHK  240
QSERRRRDKI NQRMKELQKL VPNSSKTDKA SMLDEVIQYM KQLQAQVQMM NWMKMYTSMM  300
LPITMQQQQQ QQLKMSMMMA QMGMGMGMSK DMVMNMNSMN IPGFPPMLPF PSFMPMAPCG  360
DQLQGTPEKS VTMDAYSTMA SLYQQLFHPP ASSSKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242247ERRRRD
2243248RRRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHM99413.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311000.0KT031100.1 Glycine max clone HN_CCL_212 bHLH transcription factor (Glyma03g04000.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028224273.10.0transcription factor UNE10-like
TrEMBLA0A0B2NVW10.0A0A0B2NVW1_GLYSO; Transcription factor UNE10
STRINGGLYMA03G04000.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.19e-47bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]