PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHM99419.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 365aa    MW: 40545.4 Da    PI: 4.8279
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHM99419.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0015426123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                +kC+ C +sF +   L  H+r+H
  KHM99419.1  4 HKCKLCLRSFANGRALGGHMRSH 26
                79********************9 PP
2zf-C2H212.30.00053221243123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ykC+ C k+F++   L  H  +H
  KHM99419.1 221 YKCETCEKVFRSYQALGGHRASH 243
                 9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.074426IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-7427IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.533431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139122.9E-11220245IPR007087Zinc finger, C2H2
SuperFamilySSF576672.92E-8220296No hitNo description
PROSITE profilePS5015710.201221248IPR007087Zinc finger, C2H2
SMARTSM003550.029221243IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280223243IPR007087Zinc finger, C2H2
SMARTSM003550.22274296IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286274296IPR007087Zinc finger, C2H2
PfamPF139121.6E-10274296IPR007087Zinc finger, C2H2
PROSITE patternPS000280276296IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEKHKCKLCL RSFANGRALG GHMRSHMMNL PVPPKQSELV PIQLSFEAES SPSQSSSSFY  60
GLRENPKKNF RFADPEFSFA AAETSSVILQ DRESETESSR NPTRTRSKRA WQLGGDGGGG  120
GGGSGESEKK IMKVCKISKT NESASSVSDT TREEDVAFCL MMLSRDKWKE ENINNLLYDH  180
DQDDDEDEED DEEDENNEDD DGYESEEKSL KKSNNKVRGR YKCETCEKVF RSYQALGGHR  240
ASHKKIKLNN NNNNNNNNEG ELEVQHVVVE KKIHECPVCF RVFASGQALG GHKRTHVIGS  300
STAATTVSVR SSVATVSVRT ASTTRVGDSL IDLNLPAPVD DDEEEEEDVS QFDDSAVSDA  360
EFVKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103108RTRSKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHM99419.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0965800.0BT096580.1 Soybean clone JCVI-FLGm-20J22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517016.10.0zinc finger protein ZAT9
RefseqXP_028237853.10.0zinc finger protein ZAT9-like
TrEMBLA0A0B2NQT60.0A0A0B2NQT6_GLYSO; Zinc finger protein ZAT9
STRINGGLYMA01G32981.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.16e-63C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]