PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHM99487.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 546aa    MW: 59323.6 Da    PI: 6.6532
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHM99487.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.4e-32192249260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  KHM99487.1 192 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 249
                 8****************************************.***************85 PP
2WRKY105.82.2e-33366424159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  KHM99487.1 366 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHD 424
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-27185250IPR003657WRKY domain
PROSITE profilePS5081123.835186250IPR003657WRKY domain
SuperFamilySSF1182903.27E-25188250IPR003657WRKY domain
SMARTSM007744.1E-34191249IPR003657WRKY domain
PfamPF031061.6E-24192248IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-37351426IPR003657WRKY domain
SuperFamilySSF1182902.09E-29358426IPR003657WRKY domain
PROSITE profilePS5081138.664361426IPR003657WRKY domain
SMARTSM007743.5E-39366425IPR003657WRKY domain
PfamPF031064.1E-26367424IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MSPAKLPISR SPCVTIPPGL SPTSFLESPV LLSNMKVEPS PTTGSLSLLH QTAYGSMTSA  60
ASATFPVTTV CFNSNTVDER KPSFFEFKPH SGSNMVPADF DNHASEKSTQ IDSQGKAQAF  120
DSSALVKNES ASPSNELSLS SPVQMDCSGA SARVEGDLDE LNPRSNITTG LQASQVDNRG  180
SGLTVAAERV SDDGYNWRKY GQKHVKGSEF PRSYYKCTHP NCEVKKLFER SHDGQITEII  240
YKGTHDHPKP QPNRRYSAGT IMSVQEDRSD KASLTSRDDK GSNMCGQGSH LAEPDGKPEL  300
LPVATNDGDL DGLGVLSNRN NDEVDDDDPF SKRRKMDVGI ADITPVVKPI REPRVVVQTL  360
SEVDILDDGY RWRKYGQKVV RGNPNPRSYY KCTNTGCPVR KHVERASHDP KAVITTYEGK  420
HNHDVPTARN SCHDMAGPAS ASGQTRVRPE ESDTISLDLG MGISPAAENT SNSQGRMMLS  480
EFGDSQIHTS NSNFKFVHTT TAPGYFGVLN NNSNPYGSKE NPSDGPSLNH SAYPCPQNIG  540
RILMGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36181426677Probable WRKY transcription factor 4
2lex_A1e-36181426677Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHM99487.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195740.0EU019574.1 Glycine max WRKY35 (WRKY35) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530784.10.0probable WRKY transcription factor 20 isoform X1
RefseqXP_028246070.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A445JNA30.0A0A445JNA3_GLYSO; Putative WRKY transcription factor 20 isoform A
TrEMBLI1KYG70.0I1KYG7_SOYBN; Uncharacterized protein
STRINGGLYMA08G43770.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]