PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHM99953.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 839aa    MW: 94440 Da    PI: 7.4606
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHM99953.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.67.5e-12703728126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 y   +C+++ +tG+C yGd+CkF+H+
  KHM99953.1 703 YQPDICKDYKETGYCGYGDSCKFMHD 728
                 66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.7E-54235368IPR006563POX domain
PfamPF075261.4E-46241366IPR006563POX domain
Gene3DG3DSA:1.10.10.609.2E-9424467IPR009057Homeodomain-like
SuperFamilySSF902296.67E-9701733IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878702730IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7702729IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9703728IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-12703733IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.1E-12767820IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139201.6E-8778819No hitNo description
SuperFamilySSF578503.26E-12778821No hitNo description
SMARTSM001841.8E-4779816IPR001841Zinc finger, RING-type
CDDcd001625.57E-8779820No hitNo description
PROSITE profilePS5008910.439779817IPR001841Zinc finger, RING-type
PROSITE patternPS005180794803IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MARQLCEEKS KDMASSSHGL FYSDVSSNNP TIQPHLMNHI QGFVTDPDMF NLTTGMDMIG  60
FSKNLQQHSE SNGVMMWKSF FGKPGQLAGS SSSKTMNGSC SNFYNQHADA YNTNKQDFTS  120
GISETSSENL VVGGAHDSAP WQENRLMVDD SSLRCVFPCE GNQRPSQGLS LSLSSTNPLS  180
IGLQSFELRQ TSHHQHLSDF VSREGFFGKP VNAQQQQQQM LQDGYLSPSK GANIYQGHFL  240
IKNSKFLVPA QVLLNEFCSL GTKENDVLPK QKCSQKNKQW EEGNSGGGSS KNHSLSSLEY  300
VELQKRKTKL LAMLEEVDRR YKHYRNQMKA VVSSFEAVAG NGAATVYSAL ALKAMSRHFR  360
CLKDGIMDEI EATRKGMGEK DHVAAVPGTT RGETPRLRIV DQSLRQQRAF QQISIMETHP  420
WRPQRGLPER SVSVLRAWLF EHFLHPYPSD VDKHILMKPV SPDVRHVEFG KFSLSTEADL  480
RALDAEPRSL TLECEASLLN FSLCCINILV MEDSDQPAKS AENQQTEQVC SFFRKPVNKK  540
NIRKRTIVNE DNEEDSNNET SLLHIQKKTL KPDNKLYFST GSSKSSASAE PSEEPGKPVF  600
QFESSKEIQV QHDSKATATL ETETEFSKDA RAIRERALKQ AEESLKGKSP SSKNEKLYKG  660
MNSYKDYKAG FRREQTIASE KAGGSHGPLR ASAHIRVSAR FDYQPDICKD YKETGYCGYG  720
DSCKFMHDRG DYKSGWQMEK EWEEAEKARK MRLAAGEDAD EEGANLTDED DEDSLPFACF  780
ICRNTFVDPV VTKCKHYFCE HCALKHHAKN KKCFVCNQPT LGIFNVAHEI RRKMAEDKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M2e-6152683411317RING finger protein 113A
5z58_M2e-6152683411317RING finger protein 113A
6ff4_t2e-6152683411317RING finger protein 113A
6ff7_t2e-6152683411317RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHM99953.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5877030.0KM587703.1 Glycine max clone GmC3H6 C3H zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580557.10.0homeobox protein BEL1 homolog
RefseqXP_006580558.10.0homeobox protein BEL1 homolog
RefseqXP_006580559.10.0homeobox protein BEL1 homolog
RefseqXP_028233600.10.0homeobox protein BEL1 homolog
RefseqXP_028233601.10.0homeobox protein BEL1 homolog
RefseqXP_028233602.10.0homeobox protein BEL1 homolog
TrEMBLI1K6F60.0I1K6F6_SOYBN; Uncharacterized protein
STRINGGLYMA05G37550.60.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46502030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-139C3H family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]