PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHM99976.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ZF-HD

Protein Properties

Length: 223aa MW: 25233.5 Da PI: 7.4134

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHM99976.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	77.7	1.5e-24	59	113	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 + +Y+eClkNh ++ Ggh++DGC f+p geegt +alkC C+CH nFHR+e+ KHM99976.1 59 NEKYHECLKNHTVKNGGHTLDGCITFLPL-GEEGTLDALKCLVCNCHQNFHRKETP 113 679***********************9.999******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	4.0E-24	61	112	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-16	61	112	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.2E-21	61	111	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	21.988	62	111	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	9.86E-17	147	221	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.7E-26	153	222	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	8.1E-22	160	216	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MEFKQHEETE LRMPAATASH DDFRIPPSSR GEEEPVVAAI PVAIPVTPTP PTLAQNNNNE 60 KYHECLKNHT VKNGGHTLDG CITFLPLGEE GTLDALKCLV CNCHQNFHRK ETPNDTYLVP 120 YYHHSPLSLA AYYGEQSSRE DMEAVSDPTS SAIPHGGSSK KRFRTRFTQE QKEKMMAFAE 180 KLGWRILKHD ESVMQKFCSQ ASFQPHVLKV WVHNNKHTLG KKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-21	161	218	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHM99976.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235042	0.0	AC235042.1 Glycine max strain Williams 82 clone GM_WBa0093J18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003556881.1	1e-140	zinc-finger homeodomain protein 2
Swissprot	Q9SB61	8e-56	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A0B2NWW1	1e-168	A0A0B2NWW1_GLYSO; ZF-HD homeobox protein
STRING	GLYMA02G31216.1	1e-153	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	7e-58	homeobox protein 22

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]