PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00127.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 377aa    MW: 42506.3 Da    PI: 9.5999
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00127.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.2e-065476123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C++C++ F r  nL+ H r+H
  KHN00127.1 54 YVCEICNQGFQRDQNLQMHRRRH 76
                9*********************9 PP
2zf-C2H214.88.4e-05132154123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ C+k +  +s++k H++t+
  KHN00127.1 132 WVCERCSKGYAVQSDYKAHLKTC 154
                 58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.04E-55177No hitNo description
Gene3DG3DSA:3.30.160.601.5E-55376IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.975476IPR007087Zinc finger, C2H2
SMARTSM003550.00525476IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
PROSITE patternPS01359056137IPR019786Zinc finger, PHD-type, conserved site
SMARTSM0035521096126IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.1E-4123153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355100132159IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MLVIHNSLPP TSEAENGTAA TATNKRKRRP AGTPDPDAEV VSLSPKTLLE SDRYVCEICN  60
QGFQRDQNLQ MHRRRHKVPW KLLKRETTAV VKKRVFVCPE PSCLHHDPCH ALGDLVGIKK  120
HFRRKHNNHK QWVCERCSKG YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV ESFIEHQDAC  180
NVGRLGPETQ SQAQAVQAAA CLSRTASSET NFSTGSPWPQ SGTIIIPNPT VTVVEPSSYT  240
IVTAETNNKV HPNLELQLSN TTPTASSQEE RVHQEQLRIA KAKKALAEEA RKQAKRQIEL  300
AELEFTNAKR IRQEALAELD KAYAFKDHAI KHINSIMLQI TCRACKHHFH SPTDDQIFSY  360
ITQARQVQKH RLKPIIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-18128182357Zinc finger protein JACKDAW
5b3h_F7e-18128182357Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00127.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-144AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530980.10.0protein SHOOT GRAVITROPISM 5
RefseqXP_028246027.10.0zinc finger protein SHOOT GRAVITROPISM 5-like
SwissprotF4IPE31e-142IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A0B2NXA40.0A0A0B2NXA4_GLYSO; Zinc finger protein JACKDAW
TrEMBLA0A445JAP20.0A0A445JAP2_GLYSO; Protein SHOOT GRAVITROPISM 5
TrEMBLI1KQN10.0I1KQN1_SOYBN; Uncharacterized protein
STRINGGLYMA08G06130.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-121indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  4. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  5. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  6. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]