PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00156.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WOX
Protein Properties Length: 363aa    MW: 41453.4 Da    PI: 8.3525
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00156.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.63.8e-2282141357
                 --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                 +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  KHN00156.1  82 SRWNPTPEQLRALEELYRRgTRTPSAEQIQQITAQLrrfgKIEGKNVFYWFQNHKARERQ 141
                 7*****************99**************************************97 PP
2Wus_type_Homeobox114.74.6e-3781143365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L+++Gkie+kNVfyWFQN+kaRerqk+
         KHN00156.1  81 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKR 143
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003899.5E-579146IPR001356Homeobox domain
SuperFamilySSF466897.45E-1382148IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-982141IPR009057Homeodomain-like
PfamPF000467.2E-2082141IPR001356Homeobox domain
CDDcd000869.67E-783143No hitNo description
PROSITE profilePS5007111.45187142IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MWMVGYNEGG EFNMADYGFN GRKLRPLMPR PVTSPNNTSN ANSPYLTRIH HGNDFFSQYH  60
NLASVADQGK REFNPPPVVV SSRWNPTPEQ LRALEELYRR GTRTPSAEQI QQITAQLRRF  120
GKIEGKNVFY WFQNHKARER QKRRRQMESV VAEGHHTRDF DSTLEKKDFG ASRTVLEVEQ  180
TKNWAPSTNC STLAEESVTI QRAAKAAIAE CRTDGWLQFD EGELQHRRNF MERNATWHMM  240
QLPCPPPPTV SPHLINTPSP TTSMAPATTV TARLMDPKLI KTHDLSFFIS PNTNRENGII  300
HLSSISTQDH NNSVESQTLQ LFPIRNNADE SSCDNINHQK ETEVSVSAMN APSQFFEFLP  360
LKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00156.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028247072.10.0WUSCHEL-related homeobox 1-like isoform X1
TrEMBLA0A0B2NSP20.0A0A0B2NSP2_GLYSO; WUSCHEL-related homeobox 1
STRINGGLYMA05G33850.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.11e-62WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]