PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00205.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 163aa    MW: 19188.5 Da    PI: 9.3686
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00205.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.71.4e-139411547
                HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgkly 47
                kR +   KKA+EL vLCda+v++i+fsstgkl+
  KHN00205.1  9 KRIENTTKKANELTVLCDAKVSIIMFSSTGKLH 41
                7888888*************************8 PP
2K-box58.82.3e-2062133174
       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnelll 74 
                 yq + g++ +++++e++q++l+kLk+ ++nL++e   ++G++L++L +++L+ Le+ ++k+ k +R++K +l++
  KHN00205.1  62 YQMTLGVDIWNSHYENMQENLKKLKEVNRNLRKE--FRMGDCLNELGMEDLRLLEEGMDKAAKVVRERKVRLII 133
                 67788899*************************9..67*******************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.241147IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-15146IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.15E-17386IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-9924IPR002100Transcription factor, MADS-box
PfamPF003191.0E-10941IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-92445IPR002100Transcription factor, MADS-box
PfamPF014861.1E-1073132IPR002487Transcription factor, K-box
PROSITE profilePS512978.63175163IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MARGKIQIKR IENTTKKANE LTVLCDAKVS IIMFSSTGKL HKIEQSYVFF ILYLNKAIFD  60
QYQMTLGVDI WNSHYENMQE NLKKLKEVNR NLRKEFRMGD CLNELGMEDL RLLEEGMDKA  120
AKVVRERKVR LIICSYLYTS CNQASYPVHM LFENKSKDLK FCI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
UniProtTranscription factor involved in the genetic control of flower development. Necessary for the normal development of petals. Absence of the PMADS1 protein causes transformation of petals into sepals.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00205.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352116e-89AC235211.1 Glycine max strain Williams 82 clone GM_WBb0019L21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025982666.16e-70floral homeotic protein PMADS 1-like
SwissprotE0CPH45e-47AP3_VITVI; Agamous-like MADS-box protein AP3
SwissprotQ074726e-47MADS1_PETHY; Floral homeotic protein PMADS 1
TrEMBLA0A0B2NT151e-117A0A0B2NT15_GLYSO; Floral homeotic protein PMADS 1
STRINGGLYMA03G26261.13e-82(Glycine max)
STRINGGLYMA12G13560.13e-82(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2230424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-38MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  5. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  6. Kush A,Brunelle A,Shevell D,Chua NH
    The cDNA sequence of two MADS box proteins in Petunia.
    Plant Physiol., 1993. 102(3): p. 1051-2
    [PMID:8278527]