PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00248.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 180aa    MW: 19814.3 Da    PI: 8.1146
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00248.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.81.4e-063302254
                HHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksL 54
                 L+el+P++      K +Ka++L  A+eY+k L
  KHN00248.1  3 ILKELIPNC-----NKTDKASMLDDAIEYLKTL 30
                59******8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.712130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-10242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-9340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.42E-7435No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MRILKELIPN CNKTDKASML DDAIEYLKTL KLQIQMMSMD AGFCIPFMML RNAAHHMMNT  60
PLLHQLMGLG MGFRPDTAIP CSLPQFPITP LPAITDNRVH FFGFPNQVPP MPISHAPFIP  120
MLGNPSTQTP LATSTAINLA ENPASSQLTT LMASVPKNLY LSGQSEYATK QAPSQVSLHH
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00248.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0958541e-164BT095854.1 Soybean clone JCVI-FLGm-15A10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014619566.11e-130transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
RefseqXP_028183410.11e-130transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like
TrEMBLA0A445LHY01e-129A0A445LHY0_GLYSO; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 (Fragment)
STRINGGLYMA02G00981.11e-129(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133291829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-18phytochrome interacting factor 3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]