PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN00315.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SBP

Protein Properties

Length: 957aa MW: 106537 Da PI: 6.1791

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN00315.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.8	2.1e-40	99	176	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvCe+hska+ +lv + +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ KHN00315.1 99 VCQVEDCSADLSKAKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNH 176 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.1E-33	93	161	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.18	97	174	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.94E-38	98	178	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.5E-29	100	173	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	2.1E-6	706	842	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.38E-7	728	841	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.69E-6	731	842	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 957 aa Download sequence Send to blast
MVLEWDSNFS LGILVAGGPS NSSSTSEEVD PRDPKGNKEG DKKRRVIVLE DDGLNEEGGT 60 LSLKLGGHAS AVVDREVGSW DGTNGKKSRV SGSTSNRAVC QVEDCSADLS KAKDYHRRHK 120 VCEMHSKASR ALVGNAMQRF CQQCSRFHLL QEFDEGKRSC RRRLAGHNKR RRKTNHEAVP 180 NGSSLNDDQT SSYLLISLLK ILSNMHSDRS DQTTDQDLLT HILRSLASQN GEQGSKNIAN 240 LLREPENLLR EDGSSRKSEM MSTLFSNGSQ GSPTDTRQHE TVSIAKMQQQ VMHAHDARAA 300 DQQITSSIKP SMSNSPPAYS EARDSTAGQI KMNNFDLNDI YIDSDDGMED LERLPVSTNL 360 VTSSLDYPWA QQDSHQSSPP QTSGNSDSAS AQSPSSFSGE AQSRTDRIVF KLFGKEPNDF 420 PLVLRAQILD WLSHSPTDME SYIRPGCIVL TIYLRQAEAL WEELCYDLTS SLNRLLDVSD 480 DTFWRNGWVH IRVQHQMAFI FNGQVVIDTS LPFRSNNYSK ILTVSPIAAP ASKRAQFSVK 540 GVNLIRPATR LMCALEGKYL VCEDAHMSMD QSSKEPDELQ CVQFSCSVPV MNGRGFIEIE 600 DQGLSSSFFP FIVVEEDVCS EICTLEPLLE LSETDPDIEG TGKIKAKNQA MDFIHEMGWL 660 LHRSQLKLRM VQLNSSEDLF PLKRFKWLIE FSMDHDWCAA VRKLLNLLLD GTVNTGDHPS 720 LYLALSEMGL LHKAVRRNSK QLVECLLRYV PENISDKLGP EDKALVDGEN QTFLFRPDVV 780 GPAGLTPLHI AAGKDGSEDV LDALTNDPCM VGIEAWKNAR DSTGSTPEDY ARLRGHYAYI 840 HLVQKKINKR QGAAHVVVEI PSNTTESNTN EKQNELSTTF EIGKAEVIRG QGHCKLCDKR 900 ISCRTAVGRS LVYRPAMLSM VAIAAVCVCV ALLFKSSPEV ICMFRPFRWE NLDFGTS

Sequence ? help Back to Top

Protein Sequence Length: 957 aa Download sequence Send to blast

MVLEWDSNFS LGILVAGGPS NSSSTSEEVD PRDPKGNKEG DKKRRVIVLE DDGLNEEGGT  60
LSLKLGGHAS AVVDREVGSW DGTNGKKSRV SGSTSNRAVC QVEDCSADLS KAKDYHRRHK  120
VCEMHSKASR ALVGNAMQRF CQQCSRFHLL QEFDEGKRSC RRRLAGHNKR RRKTNHEAVP  180
NGSSLNDDQT SSYLLISLLK ILSNMHSDRS DQTTDQDLLT HILRSLASQN GEQGSKNIAN  240
LLREPENLLR EDGSSRKSEM MSTLFSNGSQ GSPTDTRQHE TVSIAKMQQQ VMHAHDARAA  300
DQQITSSIKP SMSNSPPAYS EARDSTAGQI KMNNFDLNDI YIDSDDGMED LERLPVSTNL  360
VTSSLDYPWA QQDSHQSSPP QTSGNSDSAS AQSPSSFSGE AQSRTDRIVF KLFGKEPNDF  420
PLVLRAQILD WLSHSPTDME SYIRPGCIVL TIYLRQAEAL WEELCYDLTS SLNRLLDVSD  480
DTFWRNGWVH IRVQHQMAFI FNGQVVIDTS LPFRSNNYSK ILTVSPIAAP ASKRAQFSVK  540
GVNLIRPATR LMCALEGKYL VCEDAHMSMD QSSKEPDELQ CVQFSCSVPV MNGRGFIEIE  600
DQGLSSSFFP FIVVEEDVCS EICTLEPLLE LSETDPDIEG TGKIKAKNQA MDFIHEMGWL  660
LHRSQLKLRM VQLNSSEDLF PLKRFKWLIE FSMDHDWCAA VRKLLNLLLD GTVNTGDHPS  720
LYLALSEMGL LHKAVRRNSK QLVECLLRYV PENISDKLGP EDKALVDGEN QTFLFRPDVV  780
GPAGLTPLHI AAGKDGSEDV LDALTNDPCM VGIEAWKNAR DSTGSTPEDY ARLRGHYAYI  840
HLVQKKINKR QGAAHVVVEI PSNTTESNTN EKQNELSTTF EIGKAEVIRG QGHCKLCDKR  900
ISCRTAVGRS LVYRPAMLSM VAIAAVCVCV ALLFKSSPEV ICMFRPFRWE NLDFGTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-31	91	173	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN00315.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001352074.1	0.0	squamosa promoter-binding-like protein 1
Refseq	XP_028184385.1	0.0	squamosa promoter-binding-like protein 1
Swissprot	Q9S7P5	0.0	SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBL	A0A445IG44	0.0	A0A445IG44_GLYSO; Squamosa promoter-binding-like protein 1 isoform A
STRING	GLYMA10G01211.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]