PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN00329.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 282aa MW: 32318.9 Da PI: 4.8354

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN00329.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.9e-17	33	80	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd l+++v+ G g+W++ ar g++Rt+k+c++rw++yl KHN00329.1 33 KGPWTEEEDSVLINYVNFQGEGQWNSLARSAGLKRTGKSCRLRWLNYL 80 79********************************************97 PP
2	Myb_DNA-binding	47.3	4.7e-15	86	129	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E++l+++++ ++G++ W++Ia+++g gRt++++k++w++ KHN00329.1 86 RGNITLQEQLLILELHSRWGNR-WAKIAEELG-GRTDNEIKNYWRT 129 7899****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16	28	80	IPR017930	Myb domain
SuperFamily	SSF46689	3.4E-29	30	127	IPR009057	Homeodomain-like
SMART	SM00717	7.1E-14	32	82	IPR001005	SANT/Myb domain
Pfam	PF00249	4.2E-15	33	80	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-21	34	87	IPR009057	Homeodomain-like
CDD	cd00167	1.85E-9	35	80	No hit	No description
PROSITE profile	PS51294	22.438	81	135	IPR017930	Myb domain
SMART	SM00717	3.0E-13	85	133	IPR001005	SANT/Myb domain
Pfam	PF00249	4.8E-14	86	129	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-20	88	133	IPR009057	Homeodomain-like
CDD	cd00167	2.62E-6	106	129	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MDTISVQAMR SLSDSDSLSS ATYASEEDMK IKKGPWTEEE DSVLINYVNF QGEGQWNSLA 60 RSAGLKRTGK SCRLRWLNYL RPNVRRGNIT LQEQLLILEL HSRWGNRWAK IAEELGGRTD 120 NEIKNYWRTR VVKQAKQLKC DVNSKQFRDT VRFVWMPRLM EQIQASFRIV PSDSSHGLDQ 180 TTLCNTQQTE SSTDANPTMF CDNSMVSSYS SEVDLQPLSL SDTSTTSSSE SAEKKESISS 240 SLWQQWDYSD LQAFEPCNGF GDADLWTDEN IWFLQQHLAD HL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-23	31	127	25	120	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269\|PubMed:22301384}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN00329.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269\|PubMed:22301384}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC589299	1e-124	KC589299.1 Macrotyloma uniflorum cultivar VZM-1 transcription factor MYB76 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003536860.1	0.0	transcription factor MYB78
Refseq	XP_028183845.1	0.0	transcription factor MYB78-like
Swissprot	Q10MB4	8e-76	MYB2_ORYSJ; Transcription factor MYB2
TrEMBL	A0A445IG96	0.0	A0A445IG96_GLYSO; Transcription factor MYB2
TrEMBL	I1L7M4	0.0	I1L7M4_SOYBN; Uncharacterized protein
STRING	GLYMA10G01340.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF875	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	2e-68	myb domain protein 78

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang A,Dai X,Zhang WH A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice. J. Exp. Bot., 2012. 63(7): p. 2541-56 [PMID:22301384] Chen X, et al. The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway. Plant Cell Physiol., 2014. 55(3): p. 604-19 [PMID:24399239] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Lv Y, et al. New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis. Plant Cell Environ., 2016. 39(3): p. 556-70 [PMID:26381647] Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]