PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN00507.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SRS

Protein Properties

Length: 195aa MW: 21313.4 Da PI: 8.0466

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN00507.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	172.5	2.1e-53	1	126	22	154
DUF702 22 eRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletsslPeevsseavfrcvrv 120 +RCRtCCksrg+dC+thvkstWvpa+krrerqq+laa+++++ +e++++++r+ +++ + +s+t+l+s+ e ++P+ vss+a frcvrv KHN00507.1 1 MRCRTCCKSRGYDCQTHVKSTWVPASKRRERQQALAALQQQQ----QEQQQQQQRDISKRPRDPTSCTRLPSSGL---EEEGNFPSVVSSPAEFRCVRV 92 7*********************************997776....44566667777777888899999998754...46778************ PP DUF702 121 ssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s v+d+++ +aYqtavsigGhvfkGiLyd+G+e+ KHN00507.1 93 SCVEDADDRYAYQTAVSIGGHVFKGILYDYGPEN 126 ******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	8.3E-54	1	125	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.9E-17	1	28	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.8E-25	77	124	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MRCRTCCKSR GYDCQTHVKS TWVPASKRRE RQQALAALQQ QQQEQQQQQQ RDISKRPRDP 60 TSCTRLPSSG LEEEGNFPSV VSSPAEFRCV RVSCVEDADD RYAYQTAVSI GGHVFKGILY 120 DYGPENNNHN NSNNNSNNNY TAGETSAGVV AAAQPLNLAA ISSAALVDTS SLYSAPVNAF 180 MAGGSGTQFF PHTRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN00507.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028196870.1	1e-143	protein SHI RELATED SEQUENCE 1-like
Refseq	XP_028196876.1	1e-143	protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9SD40	3e-56	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A445LJS7	1e-141	A0A445LJS7_GLYSO; Protein SHORT INTERNODES isoform A
STRING	GLYMA02G05830.1	1e-141	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	1e-45	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]