PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00562.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 212aa    MW: 25015.1 Da    PI: 6.1097
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00562.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.7e-1954107356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k++++t eq+  Le+ F +++++  e++ +LA +l+L+ rqV vWFqNrR ++k
  KHN00562.1  54 KKRKLTVEQISLLERNFSNEHKLESERKDQLALELSLDPRQVAVWFQNRRSRWK 107
                 56699************************************************9 PP
2HD-ZIP_I/II110.11.5e-3554144292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kkr+l+ eq++lLE++F++e+kLe+erK +la eL l+prqvavWFqnrR R+kt++lE++y+ Lk+ +++ + ++++Le+ev +L+e+l 
   KHN00562.1  54 KKRKLTVEQISLLERNFSNEHKLESERKDQLALELSLDPRQVAVWFQNRRSRWKTQKLEEEYSNLKNVHETTMLDKCHLENEVLKLKEQLL 144
                  9**************************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.5E-1552113IPR001356Homeobox domain
PfamPF000463.3E-1654107IPR001356Homeobox domain
PROSITE profilePS5007116.32554109IPR001356Homeobox domain
SuperFamilySSF466896.84E-1754117IPR009057Homeodomain-like
CDDcd000867.92E-1454110No hitNo description
Gene3DG3DSA:1.10.10.603.6E-1956116IPR009057Homeodomain-like
PROSITE patternPS00027084107IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MNHQLIEDHM MLFPWLCPGG AFTEVTPQQG ENNKPRHKRN RKNRGGENGT IITKKRKLTV  60
EQISLLERNF SNEHKLESER KDQLALELSL DPRQVAVWFQ NRRSRWKTQK LEEEYSNLKN  120
VHETTMLDKC HLENEVLKLK EQLLETKKEI EQLLERGEKA PSNNSSSSQS MEEAVNPPFL  180
GEFRVEEYDD GDVFYIPETH HINGMEWINL YN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13743KRNRKNR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00562.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519905.11e-157homeobox-leucine zipper protein ATHB-40
RefseqXP_028197554.11e-157homeobox-leucine zipper protein ATHB-40-like
SwissprotO232086e-59ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A445LK311e-155A0A445LK31_GLYSO; Homeobox-leucine zipper protein ATHB-40
TrEMBLK7K6N91e-155K7K6N9_SOYBN; Uncharacterized protein
STRINGGLYMA02G06560.21e-156(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.19e-42homeobox protein 40
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]