PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00692.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 168aa    MW: 18168.5 Da    PI: 10.1188
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00692.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.76.9e-1874107134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  KHN00692.1  74 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 107
                 99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.54368104IPR000679Zinc finger, GATA-type
SMARTSM004019.1E-1768118IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.9E-1572105IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.8E-1572131No hitNo description
CDDcd002024.83E-1373120No hitNo description
PfamPF003201.5E-1574108IPR000679Zinc finger, GATA-type
PROSITE patternPS0034407499IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MQLISPASST GENVQHNATT TSKAASSDSE NFAESVIKGP KQASGEHKNK RKIKVTFSSG  60
QEQQNAPSQA VRKCLHCEIT KTPQWRAGPM GPKTLCNACG VRYKSGRLFP EYRPAASPTF  120
CAAVHSNSHK KVIEMRNKTG TKSGFATDSP ASPELIPNTN NSLTLEYM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00692.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574762.11e-120GATA transcription factor 8 isoform X2
RefseqXP_006574763.11e-120GATA transcription factor 8 isoform X2
RefseqXP_028199239.11e-120GATA transcription factor 8-like isoform X2
RefseqXP_028199247.11e-120GATA transcription factor 8-like isoform X2
SwissprotQ9SV302e-42GATA8_ARATH; GATA transcription factor 8
TrEMBLA0A445LKP31e-118A0A445LKP3_GLYSO; GATA transcription factor
TrEMBLK7K6X91e-118K7K6X9_SOYBN; GATA transcription factor
TrEMBLK7K6Y11e-119K7K6Y1_SOYBN; Uncharacterized protein
STRINGGLYMA02G08145.21e-119(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-44GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]