PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00700.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 325aa    MW: 37630 Da    PI: 7.2352
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00700.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS247.26.5e-76732373374
        GRAS  73 nsseelaalklfsevsPilkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetger 164
                 +s+ee+ a++ ++ vsP+++f+h+taNqaIlea e+e     +++H+iDfdis+G+QWp+L+q+L++++  ++   lRiTg+g+    + +el+et+ r
  KHN00700.1   7 TSEEEFLAFTDLYRVSPYYQFAHFTANQAILEAYEEEeernnKALHVIDFDISYGFQWPSLIQSLSQKAtsGKRIFLRITGFGN----NLKELQETEAR 101
                 47788889999************************9988887889*********************9997455559********....99********* PP

        GRAS 165 LakfAeelg..vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflea 260
                 L +f + +g  + fef+ ++     + +  +Lr +++E +aVnlv  l +l   s       +++L +v slsP +vv+v qe ++ + ++Fl rf+e+
  KHN00700.1 102 LVSFSKGFGnhLVFEFQGILR---GSSRAFNLRKRKNEIVAVNLVSYLNTLS--SFMK---VSHTLGFVHSLSPSIVVLVKQEGSCrSLKTFLSRFTES 192
                 ******997336788888533...34456799999***********999997..3333...457*********************98999********* PP

        GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerre....rhetlekWrerleeaGFkpvplsekaakqaklllrkvk.s.......d 347
                 l+y++a+fdsl+  lp es er  +E++llg+ei++++    ++ +e    + e++e+W+ r+e+ GF   ++s+k + qaklll++           +
  KHN00700.1 193 LHYFAAMFDSLDDCLPLESTERLRIEKQLLGKEIKSMLNYDMDDGVEyycpKYERMETWKGRMENHGFVGRKISSKCVIQAKLLLKMRThYyplqfeeE 291
                 **************************************999998777444478********************************98651111111112 PP

        GRAS 348 g...yrveee.sgslv.lgWkdrpLvsvSaWr 374
                 g   +rv e+ +g ++ lgW++r L++vSaW+
  KHN00700.1 292 GgggFRVSERdEGRVIsLGWQNRFLLTVSAWQ 323
                 12336666654555558**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.8551290IPR005202Transcription factor GRAS
PfamPF035142.3E-737323IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MLMEEPTSEE EFLAFTDLYR VSPYYQFAHF TANQAILEAY EEEEERNNKA LHVIDFDISY  60
GFQWPSLIQS LSQKATSGKR IFLRITGFGN NLKELQETEA RLVSFSKGFG NHLVFEFQGI  120
LRGSSRAFNL RKRKNEIVAV NLVSYLNTLS SFMKVSHTLG FVHSLSPSIV VLVKQEGSCR  180
SLKTFLSRFT ESLHYFAAMF DSLDDCLPLE STERLRIEKQ LLGKEIKSML NYDMDDGVEY  240
YCPKYERMET WKGRMENHGF VGRKISSKCV IQAKLLLKMR THYYPLQFEE EGGGGFRVSE  300
RDEGRVISLG WQNRFLLTVS AWQPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-461432498380Protein SCARECROW
5b3h_A1e-461432497379Protein SCARECROW
5b3h_D1e-461432497379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518339.10.0protein SCARECROW
RefseqXP_028199324.10.0protein SCARECROW-like
TrEMBLA0A445LKN50.0A0A445LKN5_GLYSO; DELLA protein GAI
TrEMBLK7K6Y40.0K7K6Y4_SOYBN; Uncharacterized protein
STRINGGLYMA02G08241.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62002952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.13e-48GRAS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]