PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00764.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 354aa    MW: 41234.9 Da    PI: 5.2928
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00764.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix100.31.6e-31173258187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+k ev++Li++r+++e +++++  k+plWe++s++m++ g++rs+k+Ckekwen+nk++kk++e++k+r  e+s+tcpyf++lea
  KHN00764.1 173 RWPKAEVHDLIRLRTSLEIKYQENGPKAPLWEDISIAMQRLGYNRSAKRCKEKWENINKYFKKVRESSKER-REDSKTCPYFHELEA 258
                 8*********************************************************************8.78999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.806166230IPR017877Myb-like domain
PfamPF138377.7E-21172259No hitNo description
CDDcd122035.45E-25173237No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MNAPFLTTTT STSSSTASDE DLEERYRRKR KWKDYFRRLT RKVLLKQEEM QKKFLEAMDQ  60
RERERVAQQD NWRMQEMARI NREHEILVQE RSTASAKDAA VIALLQKMYG QQNPTQHVEV  120
EPPQQQKQTM PQSQPPILMP NNNFEVKKMN NGHSATSTTT TTTSPVSSSS SSRWPKAEVH  180
DLIRLRTSLE IKYQENGPKA PLWEDISIAM QRLGYNRSAK RCKEKWENIN KYFKKVRESS  240
KERREDSKTC PYFHELEALY KEKGKSQNPF GMFQNMTPNE TMMMEPLMVQ PEQQWRPPPQ  300
SLEEGIGKDN ASEEYNQEKE EEVEENGGDD DNIEEDGDSV EDAGPNPCEI ATNN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00764.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028199752.10.0trihelix transcription factor GT-2-like
SwissprotQ391174e-81TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A445LLD70.0A0A445LLD7_GLYSO; Trihelix transcription factor GT-2
STRINGGLYMA02G09050.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.29e-75Trihelix family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]