PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00770.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 487aa    MW: 54627.6 Da    PI: 4.5093
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00770.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.71.2e-3288352128
         NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                 k+++++w+fF++rd+ky++g r+nrat++gyWkatgkd++v++ +++ vg+kktLvfy grap+ge+tdWvmhey+l
  KHN00770.1   8 KTGDRQWFFFCHRDRKYPNGGRSNRATRRGYWKATGKDRNVIC-NSRSVGVKKTLVFYAGRAPSGERTDWVMHEYTL 83 
                 67899**************************************.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.8271106IPR003441NAC domain
SuperFamilySSF1019413.92E-368106IPR003441NAC domain
PfamPF023652.7E-151383IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MAWQSILKTG DRQWFFFCHR DRKYPNGGRS NRATRRGYWK ATGKDRNVIC NSRSVGVKKT  60
LVFYAGRAPS GERTDWVMHE YTLDEEELKR CQGVKDYYAL YKVYKKSGPG PKNGEQYGAP  120
FNEEEWADDD IVDFNINSAD REAPNDVADN VNVPLPFLDD EINNIIRGIL DDELVLDQQH  180
VNGYPDFPQV VSEETQSTVV DQFSEDVMLP EPVRISHPSC QFFDAQPSFD FNRPVTSHLH  240
VSETSEVTSA SNIKTKELDF NEDGFLEIND LIDTEPTLSN VENSVEYQHF EDGLSELDLF  300
QDAQMFLRDL GPIIHETDSH AYTNALVSSS NIECQSYQLL PNPEDANQTV GEFWMHGESN  360
QLSSPGVVYE SVGFPTEGNN NQSSTVEDVA TSSLSSALWA FVESIPTTPA SAAESALVNR  420
ALNRMSSFSR LKIKHTNIAA SGKDTGTMKR AGRKGLPFLF FSILIALCAF CWVFVGNLRL  480
VGRSISP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-271010669165NO APICAL MERISTEM PROTEIN
1ut4_B3e-271010669165NO APICAL MERISTEM PROTEIN
1ut7_A3e-271010669165NO APICAL MERISTEM PROTEIN
1ut7_B3e-271010669165NO APICAL MERISTEM PROTEIN
3swm_A3e-271010672168NAC domain-containing protein 19
3swm_B3e-271010672168NAC domain-containing protein 19
3swm_C3e-271010672168NAC domain-containing protein 19
3swm_D3e-271010672168NAC domain-containing protein 19
3swp_A3e-271010672168NAC domain-containing protein 19
3swp_B3e-271010672168NAC domain-containing protein 19
3swp_C3e-271010672168NAC domain-containing protein 19
3swp_D3e-271010672168NAC domain-containing protein 19
4dul_A3e-271010669165NAC domain-containing protein 19
4dul_B3e-271010669165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6573050.0KF657305.1 Glycine max NAC transcription factor (SNAC38) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028220619.10.0NAC domain-containing protein 17-like
TrEMBLA0A445F6C50.0A0A445F6C5_GLYSO; NAC domain-containing protein 17 isoform A
STRINGGLYMA20G31210.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61313451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-103NAC domain containing protein 17
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]