PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00842.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 570aa    MW: 62689.9 Da    PI: 7.482
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00842.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.11.7e-23101202199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF   + +++ l
  KHN00842.1 101 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKRLVAGDSIVFL--RAENGDL 195
                 89****************************986445444..8************************************************..4488999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+++r+
  KHN00842.1 196 CVGIRRA 202
                 ****997 PP
2Auxin_resp110.12.3e-36256338283
  Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 ++ a ++ +FevvY+Pras++eF+vk++ v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+ Wp+S+Wr+L+
  KHN00842.1 256 VTCAVNGRPFEVVYYPRASSPEFCVKASVVKAAMQIQWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPILWPDSPWRLLQ 338
                 6678899**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.7E-3894204IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-3096202IPR015300DNA-binding pseudobarrel domain
CDDcd100172.12E-22100201No hitNo description
SMARTSM010191.8E-20101203IPR003340B3 DNA binding domain
PfamPF023621.2E-21101202IPR003340B3 DNA binding domain
PROSITE profilePS5086313.253101203IPR003340B3 DNA binding domain
PfamPF065074.4E-32256338IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MVQMPPLNTK VFYFPQGHAE HAHGKRVDFA KNQTRVPPLI PCRLSAMKYM ADPDTDEVYV  60
KMRLTPLREH ELLDSQDDCF LGNSAGGGGV DQGQEKPPTS FAKTLTQSDA NNGGGFSVPR  120
YCAETIFPRL DYSAEPPVQT IIAKDMHGQC WKFRHIYRGT PRRHLLTTGW SNFVNQKRLV  180
AGDSIVFLRA ENGDLCVGIR RAKKGIGGGT EFSSGGWNNP LFGGGFLCGS ESNLMSGGDH  240
EMLVGRVAAE SVVEAVTCAV NGRPFEVVYY PRASSPEFCV KASVVKAAMQ IQWCSGMRFK  300
MPFETEDSSR ISWFMGTISS VQVADPILWP DSPWRLLQVV WDEPDLLQNV KCVNPWLVEL  360
VSNMPTFNLS AYSPPRKKQR FLQDPYFQVI NQLPMPSFSS NLLNYTNSIC TIEDNNSSGG  420
IQGARHPQFG LSPSDFPFNK LPADMLLGGF SRLDHAAAQP IMPHCGTFKN NTTTKANVDI  480
SCLLTVGNPG QNFKESNETK APHILLFGKL IHTEQKSSNT TSSASTNGNS VSEGNSLKTS  540
NASDGGSPWY KEQHKSDLGN DNVNTLCIAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-71135963388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00842.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028219752.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A445F6S90.0A0A445F6S9_GLYSO; Auxin response factor
STRINGGLYMA20G32040.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]