PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00851.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 107aa    MW: 12562.5 Da    PI: 10.6473
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00851.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000211739323
                ET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                Cp   Cgk Fs++ +   H+r+H
  KHN00851.1 17 CPheGCGKKFSSHKYALLHQRVH 39
                88889****************99 PP
2zf-C2H212.20.000574669223
                EET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2  2 kCp..dCgksFsrksnLkrHirtH 23
                kCp   C++sF+     + Hir+H
  KHN00851.1 46 KCPwkGCSMSFKWAWARTEHIRVH 69
                89********************99 PP
3zf-C2H212.50.0004575101123
                 EEET..TTTEEESSHHHHHHHHHH..T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt..H 23 
                 y C+   Cg sF+  s++ rH r+  H
  KHN00851.1  75 YHCKveGCGLSFRFVSDFSRHRRKtgH 101
                 89*********************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.58E-8252No hitNo description
PROSITE profilePS5015711.781544IPR007087Zinc finger, C2H2
SMARTSM003550.671539IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-61743IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002801739IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-114469IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00164569IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.034574IPR007087Zinc finger, C2H2
PROSITE patternPS0002804769IPR007087Zinc finger, C2H2
SuperFamilySSF576673.48E-1255105No hitNo description
Gene3DG3DSA:3.30.160.602.9E-127098IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.26375106IPR007087Zinc finger, C2H2
SMARTSM003550.6675101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028077101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0032259Biological Processmethylation
GO:0003676Molecular Functionnucleic acid binding
GO:0008168Molecular Functionmethyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MSFKTKAELQ LHKRNLCPHE GCGKKFSSHK YALLHQRVHN DDRPLKCPWK GCSMSFKWAW  60
ARTEHIRVHT GEKPYHCKVE GCGLSFRFVS DFSRHRRKTG HHVKPPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A2e-53110432135Lysine-specific demethylase REF6
6a58_A2e-53110432135Lysine-specific demethylase REF6
6a59_A2e-53110432135Lysine-specific demethylase REF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00851.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-131AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014628228.12e-71probable lysine-specific demethylase ELF6 isoform X2
RefseqXP_028220589.13e-71probable lysine-specific demethylase ELF6
RefseqXP_028220590.13e-71probable lysine-specific demethylase ELF6
SwissprotQ6BDA01e-52ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLA0A445F6U16e-70A0A445F6U1_GLYSO; Putative lysine-specific demethylase ELF6 isoform A
STRINGGLYMA20G32160.11e-70(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80313034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.15e-55C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  5. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]