PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00884.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 328aa    MW: 37072.4 Da    PI: 9.3919
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00884.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.76.4e-1842135283
    trihelix   2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                 Wt qe+l Li+a++ ++er  ++             + + +W++v ++++++g+ rs++qC++kw+nl ++ykk+++ e+k ++++ ++ ++f 
  KHN00884.1  42 WTIQETLILITAKKLDDERRLKTPaacststtttrtSGELRWKWVENYCWSHGCLRSQNQCNDKWDNLLRDYKKVRDYESKSNDNDNNNNKHFP 135
                 *************9555554443223455566666699*******************************************9888887777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.86434110IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.3E-535112IPR009057Homeodomain-like
PfamPF138371.3E-1141138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSDPSTLLPS SHNPQVPLIQ GGATAPSSSS TTLAREYRKG NWTIQETLIL ITAKKLDDER  60
RLKTPAACST STTTTRTSGE LRWKWVENYC WSHGCLRSQN QCNDKWDNLL RDYKKVRDYE  120
SKSNDNDNNN NKHFPSYWTL NKQQRKEQNL PSNMVFEVYQ TIADVLQRKQ TQSQRQHQQP  180
LAIPLVTSSP SPLQTLPPPP LPPPPPPPPP PPPVSSTTPV GSERSESSGT EHSEDDDDGS  240
ESKRRKVKNL GSRIMQSASV LARALRSCEE KKEKRHREMI ELEQRRIQME EARNEVHRQG  300
IATLVAAVTN LSGAIESLIN NSERHGQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00884.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2210260.0KF221026.1 Glycine max cultivar Williams 82K clone 3f3r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds.
GenBankKF2210290.0KF221029.1 Glycine max cultivar Kwangkyo clone 3f3r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds.
GenBankKF2210310.0KF221031.1 Glycine max cultivar Seoritae clone 3f3r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds.
GenBankKF2210330.0KF221033.1 Glycine max cultivar Haman clone 3f3r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds.
GenBankKF2210350.0KF221035.1 Glycine max cultivar Hwangkeum clone 3f3r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006606274.10.0trihelix transcription factor ASR3
RefseqXP_028219696.10.0trihelix transcription factor ASR3-like
TrEMBLA0A445F7470.0A0A445F747_GLYSO; Trihelix transcription factor ASR3
TrEMBLK7N4B10.0K7N4B1_SOYBN; Uncharacterized protein
STRINGGLYMA20G32540.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68043242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.12e-42Trihelix family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]