PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00918.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 429aa    MW: 49828.2 Da    PI: 6.5973
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00918.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.63.9e-2917102187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW++qe+l L+e+r+++++++r++++k+plW e+s+ m +e g++rs k+Ckek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  KHN00918.1  17 RWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMaEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASR--QDGKHYRFFRQLEA 102
                 8*************************************7778*****************************8..55667*******85 PP
2trihelix46.97.1e-15339412171
    trihelix   1 rWtkqevlaLiearremeerlrrgk...lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                 rWt+ e+  L+++r++ e+r+r+++    + + W+e+++km+  gf rs+ +Ck+ we+++   +++ +   ++
  KHN00918.1 339 RWTEMEISNLMQLRTSFEQRFRENNngyMENGVWDEIAAKMACLGFDRSASECKQIWEEISISLRRTVDECDDG 412
                 8*********************97655599*******************************9999998877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.61477IPR001005SANT/Myb domain
CDDcd122031.64E-201682No hitNo description
PfamPF138371.0E-1916103No hitNo description
PROSITE profilePS500906.8881675IPR017877Myb-like domain
SMARTSM007170.41336401IPR001005SANT/Myb domain
CDDcd122032.42E-13338405No hitNo description
PfamPF138375.7E-10338414No hitNo description
PROSITE profilePS500906.644338399IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MESAEKGWFG FDSGNNRWPR QETLSLLEIR SRLDSKFREN NQKAPLWNEI SRIMAEEFGY  60
QRSGKKCKEK FENLYKYYKK TKEGKASRQD GKHYRFFRQL EAICGDQANN THAHASTSDK  120
THRAGGNTAA TIQKQTFTTN QDHNNGDSNN NPKCSESLSI SNSSQFETSS SENNDEDLSA  180
IAFMMKQSRD EKQKGLDHTH RPSDHRRVRK SWRTKVEEIV DSHMRKIIQT QDAWMERMLS  240
VVEQREQEMA SREEERKRKE SMWFDQQVHE LWAKEKAWVE ARDAALIEVV RKHIGIGIGL  300
EALPLVEEES PNKNKSQGSI DANEFPSEGV DPGRSSSSRW TEMEISNLMQ LRTSFEQRFR  360
ENNNGYMENG VWDEIAAKMA CLGFDRSASE CKQIWEEISI SLRRTVDECD DGAKRRPWYL  420
GLKLTDDDL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00918.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555461.10.0trihelix transcription factor PTL
RefseqXP_028222610.10.0trihelix transcription factor PTL-like
TrEMBLA0A445F7500.0A0A445F750_GLYSO; Trihelix transcription factor PTL
TrEMBLI1NHN70.0I1NHN7_SOYBN; Uncharacterized protein
STRINGGLYMA20G32940.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.12e-81Trihelix family protein