PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00986.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 199aa    MW: 22382.4 Da    PI: 8.91
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00986.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-19108159256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 +y+GVr+++ +g+++AeIrdp++ g   r++lg+f+t+ +Aaka++ a+ +++g+
  KHN00986.1 108 HYRGVRRRP-WGKFAAEIRDPKKKG--SRVWLGTFDTEIDAAKAYDCAAFRMRGH 159
                 7********.**********96643..**********99**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.3E-32107167IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-22108168IPR016177DNA-binding domain
CDDcd000189.79E-30108166No hitNo description
SMARTSM003803.2E-37108172IPR001471AP2/ERF domain
PfamPF008476.0E-14108159IPR001471AP2/ERF domain
PROSITE profilePS5103224.131108166IPR001471AP2/ERF domain
PRINTSPR003675.8E-13109120IPR001471AP2/ERF domain
PRINTSPR003675.8E-13148168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MATAEEISTL KLLRQYLLGD ISDPFLTNLI PVKLEDPSSG LDMGSNFSEQ SSFCKFLECF  60
DFEAEVVGLT SHHKVQSSIA TSPPQNFNLP EEPMVSMKKE ATCYATRHYR GVRRRPWGKF  120
AAEIRDPKKK GSRVWLGTFD TEIDAAKAYD CAAFRMRGHK AVLNFPLEAG MSHPEPNSSG  180
RKRRREYTTA ATSSRHVMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-29107167464ATERF1
3gcc_A2e-29107167464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180184RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00986.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0900810.0BT090081.1 Soybean clone JCVI-FLGm-3H9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028219549.11e-149ethylene-responsive transcription factor ERF107-like
TrEMBLA0A445F7H51e-148A0A445F7H5_GLYSO; Ethylene-responsive transcription factor ERF106
STRINGGLYMA20G33800.11e-148(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.17e-41ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]