PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN01274.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 286aa    MW: 31392.8 Da    PI: 5.984
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN01274.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.37.6e-36121032102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k y +++d+++++++swse gn+fvv+++ +fa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+g+k+ll +ik
    KHN01274.1  12 FLTKSYLLVDDPATDDVVSWSEGGNTFVVWKHADFANDLLPKYFKHNNFSSFVRQLNTYGFRKTVPDK---------WEFANEYFKRGQKDLLAEIK 99 
                   9***************************************************************9999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
    KHN01274.1 100 RRKT 103
                   **96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-37395IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.9E-578101IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.86E-329101IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.9E-3112101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-201235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-205062IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MSQQQRSMPA PFLTKSYLLV DDPATDDVVS WSEGGNTFVV WKHADFANDL LPKYFKHNNF  60
SSFVRQLNTY GFRKTVPDKW EFANEYFKRG QKDLLAEIKR RKTVSSVSGK SGSGGNISAS  120
HSGGDDMGST STGSMAVATA TVTTTQCADL SGENEKLKKD NEKLSDELAR TKKHCDDLVA  180
FLRDSLNVGP DVIDCIIRQG TCGSSNDDAV RFDATENLNN HNHDDDENAV GECEPEQPKG  240
DNGESLKLFG VWLKGQNGKE NSIGSCRKRG RQDPIAATAK ELKTLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-27710816125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN01274.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028232114.10.0heat shock factor protein HSF24-like
SwissprotP223353e-84HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A0B2P1D90.0A0A0B2P1D9_GLYSO; Heat shock factor protein HSF24
STRINGGLYMA05G20460.21e-180(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.14e-59heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]