PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN01301.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 203aa    MW: 22489.3 Da    PI: 4.6021
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN01301.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.29.5e-0641811055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                ++R +++ ++f  L   +P       +K +K +iL  A  Y+k+Lq
  KHN01301.1 41 KKRKRELAERFLALSATIPGF-----TKTDKTSILANASSYVKQLQ 81
                89999***************8.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.2323180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-43886IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-104193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-114195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-54185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MEESGENWPS DNSYLDEVND EFGSEDEEGG SFSGMGETDR KKRKRELAER FLALSATIPG  60
FTKTDKTSIL ANASSYVKQL QQRVRELEQE VQSNVSSNEG ATSSCEVNSS NDYYSGGGPN  120
EILPEVKVRV LQKDVLIIIH CEKQKGIMLK ILSQLENVNL SVVNSSVLRF GKITLDITII  180
AKMGEGYKMT VDELVKTLRV AIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13944RKKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN01301.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0942330.0BT094233.1 Soybean clone JCVI-FLGm-18I24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001240111.11e-147uncharacterized protein LOC100804953
RefseqXP_028239035.11e-147transcription factor bHLH25-like
TrEMBLA0A445JRD51e-145A0A445JRD5_GLYSO; Transcription factor bHLH25 isoform A
TrEMBLC6T9Q91e-145C6T9Q9_SOYBN; Uncharacterized protein
STRINGGLYMA07G03100.11e-146(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1460568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-22bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]