PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN01565.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 173aa    MW: 20228.5 Da    PI: 9.7359
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN01565.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.21.8e-222469449
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +  sn+qvtfskRr+g++KKA+EL++LC++ va+i+fs+ +kl+ +
  KHN01565.1 24 DKGSNKQVTFSKRRTGLFKKASELCILCNVYVAIIVFSPADKLFCF 69
                5679**************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.1E-301372IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.7541373IPR002100Transcription factor, MADS-box
CDDcd002653.49E-311484No hitNo description
SuperFamilySSF554555.76E-271490IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-191535IPR002100Transcription factor, MADS-box
PfamPF003198.2E-222769IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-193550IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-195071IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MDMFKQKEKK KNTGRKKIEI KKLDKGSNKQ VTFSKRRTGL FKKASELCIL CNVYVAIIVF  60
SPADKLFCFG HPDIDSIIGR YLKGDNAEFE SAKSSKEKSV SCEERNRQYE EAMKKLELEK  120
KNLAQIEVLT KGWNRSWWDD PIDQMTDLQL EQFMVSIYEL RKKLAERAGE LMM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-1614108291MEF2 CHIMERA
6bz1_B1e-1614108291MEF2 CHIMERA
6bz1_C1e-1614108291MEF2 CHIMERA
6bz1_D1e-1614108291MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1416KQKEKKKNTGRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN01565.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028221727.11e-125agamous-like MADS-box protein AGL61
TrEMBLA0A0B2NWY01e-124A0A0B2NWY0_GLYSO; Agamous-like MADS-box protein AGL61
STRINGGLYMA20G27361.11e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-33AGAMOUS-like 61
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]