PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN01567.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 228aa    MW: 24103.7 Da    PI: 10.8686
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN01567.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.31.7e-221866149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k+ +n++n qvtfskRr g++KKA+EL++LC+a va+++fs+  k++ +
  KHN01567.1 18 KKMSNDINLQVTFSKRRSGLFKKASELCTLCGASVALVVFSPGEKVFSF 66
                5689***************************************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.4181070IPR002100Transcription factor, MADS-box
SMARTSM004324.3E-321069IPR002100Transcription factor, MADS-box
CDDcd002654.80E-371186No hitNo description
SuperFamilySSF554551.57E-271184IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-191232IPR002100Transcription factor, MADS-box
PfamPF003192.5E-232066IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-193247IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-194768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MSSSEAKKSR GRQRIEIKKM SNDINLQVTF SKRRSGLFKK ASELCTLCGA SVALVVFSPG  60
EKVFSFGHPS VDGVIERYLT GISSRRRGSA PRSWAAFRRR PKPICGGPVA DITDINNLLK  120
LKKAFQQLKQ DVSGLAGMAL FQSVANGNPG HQFFAGASSS AVPNVVLQSQ PLPVAQVFPP  180
AVPQMMFPPP MFENYMVNPN GFDDMGMGGG GFGGAGPSSA GGGGGGFF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN01567.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555308.11e-110agamous-like MADS-box protein AGL62
RefseqXP_028219687.11e-110agamous-like MADS-box protein AGL62
TrEMBLA0A0B2P1J61e-163A0A0B2P1J6_GLYSO; Agamous-like MADS-box protein AGL62
STRINGGLYMA20G27341.11e-110(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-36AGAMOUS-like 62
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]