PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN01752.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 260aa    MW: 30258.2 Da    PI: 10.0506
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN01752.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29e-192370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd llv++v+++G g+W+++ar   ++R +k+c++rw +yl
       KHN01752.1 23 KGPWTAEEDRLLVEYVRLHGEGRWNSVARLARLKRNGKSCRLRWVNYL 70
                     79******************************99************97 PP
2Myb_DNA-binding51.72e-1676120147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T +E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
       KHN01752.1  76 RGQITSQEESIILELHTRWGNR-WSTIARSLP-GRTDNEIKNYWRTH 120
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.8241874IPR017930Myb domain
SMARTSM007173.6E-162272IPR001005SANT/Myb domain
SuperFamilySSF466893.59E-2922117IPR009057Homeodomain-like
PfamPF002495.1E-172370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-232477IPR009057Homeodomain-like
CDDcd001671.21E-112570No hitNo description
SMARTSM007172.2E-1375123IPR001005SANT/Myb domain
PROSITE profilePS5129418.91575125IPR017930Myb domain
PfamPF002494.3E-1376120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2378124IPR009057Homeodomain-like
CDDcd001676.54E-980121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MYWGEVMAGH MGRGVIEEQV WRKGPWTAEE DRLLVEYVRL HGEGRWNSVA RLARLKRNGK  60
SCRLRWVNYL RPDLKRGQIT SQEESIILEL HTRWGNRWST IARSLPGRTD NEIKNYWRTH  120
FKKKAKRPSD AVEKARNRLL RKQQFHQQQQ QQLQQQKAQQ QLQFNFDVKG IMAFLEDNSH  180
KAPYISQSRL VVNMHQNTTE EQGYLYSMPN GNCSASSALE TSAEEVLWDG LWNIDDVHGN  240
FSVASAASKV GLYNLVAPFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-27512510128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN01752.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0967530.0BT096753.1 Soybean clone JCVI-FLGm-15B2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028221394.10.0transcription factor MYB59-like isoform X1
TrEMBLA0A0B2P2700.0A0A0B2P270_GLYSO; Transcription factor MYB48
STRINGGLYMA20G20980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.13e-78myb domain protein 305
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]