PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN01780.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 387aa    MW: 44264 Da    PI: 5.9468
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN01780.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07113156447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      WT eE++ ++ + + +  + Wk I+++    +t+ q+ s+ qky
       KHN01780.1 113 WTIEEHKSFLFGLEIMKEKGWKQISEKYVPSKTASQVASHAQKY 156
                      *************************99998*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.694105161IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-6106160IPR009057Homeodomain-like
SuperFamilySSF466894.6E-12107160IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-10108159IPR006447Myb domain, plants
SMARTSM007170.0082109159IPR001005SANT/Myb domain
PfamPF002492.1E-5112156IPR001005SANT/Myb domain
CDDcd001674.41E-4113157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MSDYYFDEEE IQELLKENDA PVSDDFFNDF AAQDSSPPAD EILPADEVLD PLLVPTSHMV  60
HSSATAPDPA PHLVPSEETL PSSHPHHLLP QNMESNHVML SGDSSHHKKY EHWTIEEHKS  120
FLFGLEIMKE KGWKQISEKY VPSKTASQVA SHAQKYIKRK NTPSKERKRR SIHDTTLDDM  180
DIIRIDQHNW VPSTPNFMVQ PHTLSTHQHN WVPPPPPNFA VQPRTPHVDQ DNWVSPPSNL  240
AVQPPTPHID QHNWVPSPPN FAVQPPTPHI DQHNLVPSPP NFAVQPPTPH IDQHNWVPSP  300
PNFAPHTSLI DQDNWVPTPP DFAVQPHEMQ RAQHMQQFNL HSSSPQMDEY RNFNSGHPQN  360
ELDLIAQQIL EYKNKFNHKD NEGSTTK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN01780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006601664.11e-148myb-like protein J
TrEMBLA0A0B2NXN30.0A0A0B2NXN3_GLYSO; Transcription factor MYB1R1
STRINGGLYMA08G45255.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3571722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.16e-17MYB family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]