PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN01781.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 390aa    MW: 44988.1 Da    PI: 6.4008
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN01781.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.6e-08113156447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      WT eE++ ++ + + +  + Wk I+++    +tlkq+ s+ qky
       KHN01781.1 113 WTIEEHKSFLFGLEIMKEKGWKQISEKYVPSKTLKQVASHAQKY 156
                      *************************99998*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.888105161IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-5106160IPR009057Homeodomain-like
SuperFamilySSF466899.79E-13107160IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-11108160IPR006447Myb domain, plants
PfamPF002491.7E-5112156IPR001005SANT/Myb domain
CDDcd001676.26E-4113157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MSDYYFNEEE MQELLKENDA PVFDDFFNDF AAQDSSPPAD EILPADEVLD PPPLPTSHMV  60
HSSATAPDPA PHLVPSEETL PSSHPHPLLP QNMESNHVML SGDSSHHKKY EHWTIEEHKS  120
FLFGLEIMKE KGWKQISEKY VPSKTLKQVA SHAQKYFKRK NTPMKERKRR SIHDITLEDI  180
HMTDTSHIDK HNWVPLPTNF AVQPHTPHID QPNWVPPTPN FIVQPHTPSI HQHNWVPPTP  240
NFIAQSHTPR IDQHTWVPPA PPNFAGQPRS AHIDQLNWVS PPPNFAPHTP LVDQDNWVPT  300
PPDFAVQSHT PHIDQHNLVP PPPNFAVQPH QMQRAQHMQQ FNLHDSSPQM DEYRNFNSFH  360
PQNELDLIAQ QILEYKKNKF NHKNNEGSSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN01781.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006601664.11e-127myb-like protein J
TrEMBLA0A0B2NXE20.0A0A0B2NXE2_GLYSO; Myb-like protein J
STRINGGLYMA08G45255.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3571822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.18e-18MYB family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]