PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN01835.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 175aa    MW: 20304.7 Da    PI: 7.0869
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN01835.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.73.7e-1722112198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 ff ++++++ l+ + l+lp kf++++g+    s  + l+ ++g +W+v+l  +k++g++++++GWk+F++   L  g  + F++dg+s f  +v +++
  KHN01835.1  22 FFRIMLHENLLQGN-LRLPEKFVRKYGNH--LSNSMLLKLPNGVEWKVNL--EKRDGSVWFQEGWKDFAEYYSLANGHLLGFRYDGTSHF--HVFICD 112
                 66677666666665.***********966..7889999************..**********************************9999..888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.9E-2417113IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.7E-2517113IPR015300DNA-binding pseudobarrel domain
CDDcd100174.58E-2021112No hitNo description
PROSITE profilePS5086312.91521114IPR003340B3 DNA binding domain
PfamPF023621.4E-1422112IPR003340B3 DNA binding domain
SMARTSM010191.1E-1622114IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MTSQLDDGDG SYGYSATKPI HFFRIMLHEN LLQGNLRLPE KFVRKYGNHL SNSMLLKLPN  60
GVEWKVNLEK RDGSVWFQEG WKDFAEYYSL ANGHLLGFRY DGTSHFHVFI CDMSTMEIEY  120
PVNKANHKRP SINSEESQPH KTQKTDENMN KSNSNLQDTD IHKEARDHKG KILDS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN01835.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028246886.11e-126B3 domain-containing protein At4g01580-like
TrEMBLA0A0B2NXS01e-129A0A0B2NXS0_GLYSO; B3 domain-containing transcription factor VRN1
STRINGGLYMA08G44655.11e-126(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.13e-26B3 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]