PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN01913.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB_related

Protein Properties

Length: 92aa MW: 10676.4 Da PI: 10.5335

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN01913.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.5	1.1e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWTteE+e+l +++ G g+W++ ++ g+ R++++c++rw +yl KHN01913.1 14 KGRWTTEEEEILTKYIMANGEGSWRSLPKNTGLLRCGNSCRLRWINYL 61 79****************************99**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.2E-22	6	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.518	9	65	IPR017930	Myb domain
SMART	SM00717	6.7E-11	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-14	14	61	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.13E-20	15	91	IPR009057	Homeodomain-like
CDD	cd00167	6.03E-8	16	61	No hit	No description
PROSITE profile	PS50090	3.926	62	92	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.6E-7	65	91	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
MVRARCCEKV GLKKGRWTTE EEEILTKYIM ANGEGSWRSL PKNTGLLRCG NSCRLRWINY 60 LRADLKRGTF SVEEESTILK LHASFGSRLR RI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN01913.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT094295	1e-76	BT094295.1 Soybean clone JCVI-FLGm-18O14 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003553664.1	2e-52	transcription factor MYB111
Refseq	XP_028217761.1	2e-52	transcription factor MYB111-like
Swissprot	P27898	2e-40	MYBP_MAIZE; Myb-related protein P
TrEMBL	A0A0B2P2M1	1e-59	A0A0B2P2M1_GLYSO; Myb-related protein P
TrEMBL	K7MXA0	1e-59	K7MXA0_SOYBN; Uncharacterized protein
STRING	GLYMA19G24451.1	2e-60	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	1e-42	myb domain protein 12

Publications ? help Back to Top
Robbins ML,Sekhon RS,Meeley R,Chopra S A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize. Genetics, 2008. 178(4): p. 1859-74 [PMID:18430921] Sidorenko L,Chandler V RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene. Genetics, 2008. 180(4): p. 1983-93 [PMID:18845841] Robbins ML,Wang P,Sekhon RS,Chopra S Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism. PLoS ONE, 2009. 4(12): p. e8231 [PMID:20011605] Rhee Y,Sekhon RS,Chopra S,Kaeppler S Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize. Genetics, 2010. 186(3): p. 843-55 [PMID:20823340] Morohashi K, et al. A genome-wide regulatory framework identifies maize pericarp color1 controlled genes. Plant Cell, 2012. 24(7): p. 2745-64 [PMID:22822204] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]