PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN01996.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 360aa    MW: 40079 Da    PI: 7.4782
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN01996.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.17.8e-3380136259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 dDgynWrKYGqK+vkgsefprsYY+Ct ++Cpvkkkvers  +++v+ i+Y+geHnh+
  KHN01996.1  80 DDGYNWRKYGQKQVKGSEFPRSYYKCTNPNCPVKKKVERSL-EGHVTAIIYKGEHNHQ 136
                 8****************************************.***************8 PP
2WRKY107.47e-34247305159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+
  KHN01996.1 247 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCNVRKHVERASTDPKAVITTYEGKHNHD 305
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-2966138IPR003657WRKY domain
SuperFamilySSF1182901.57E-2577138IPR003657WRKY domain
SMARTSM007744.8E-3679137IPR003657WRKY domain
PfamPF031061.9E-2580136IPR003657WRKY domain
PROSITE profilePS5081123.76680138IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.8E-38232307IPR003657WRKY domain
SuperFamilySSF1182904.58E-30239307IPR003657WRKY domain
PROSITE profilePS5081139.18242307IPR003657WRKY domain
SMARTSM007741.1E-39247306IPR003657WRKY domain
PfamPF031062.0E-26248305IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MTHQQALAQV SAQASQANSN MHIQAEHSLT QAPAAASNTT QQLMPPLTSD SWAAMTESID  60
HSHSEQRLQS SLLNVDKPAD DGYNWRKYGQ KQVKGSEFPR SYYKCTNPNC PVKKKVERSL  120
EGHVTAIIYK GEHNHQCPHP NKCSKDTMTS NENSNMQGNV DSTYQGTSTN SMSKMDPESS  180
QATADRLSGT SDSEEVADHE TEVDEKNVEP EPKRRKAEVS QSDPPSSHRT VTEPRIIVQT  240
TSEVDLLDDG YRWRKYGQKV VKGNPYPRSY YKCTTQGCNV RKHVERASTD PKAVITTYEG  300
KHNHDVPAAK TNSHTMASNT ASQLKSHNTN PEKHNFGSRG MGGNEQQPVA RLQLKEEQIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-4480308878Probable WRKY transcription factor 4
2lex_A4e-4480308878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN01996.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195570.0EU019557.1 Glycine max WRKY9 (WRKY9) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520097.10.0probable WRKY transcription factor 4
RefseqXP_028202864.10.0probable WRKY transcription factor 4
SwissprotQ9ZQ701e-129WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A0B2NXW80.0A0A0B2NXW8_GLYSO; Putative WRKY transcription factor 3
STRINGGLYMA02G12490.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-123WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]