PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN02496.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 240aa    MW: 27208.4 Da    PI: 7.1163
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN02496.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.42.3e-26168462129
         NAM  62 skrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                 + rd+kyatg r+nrat+sgyWkatgkd++v++  ++e+vg++ktLvfy++rap+g kt W+mhe+rle
  KHN02496.1  16 CFRDRKYATGFRTNRATTSGYWKATGKDRTVVDPaTQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 84 
                 6799*****************************978888***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.4061102IPR003441NAC domain
SuperFamilySSF1019414.45E-3316102IPR003441NAC domain
PfamPF023655.7E-121883IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MHPILAYLSH VLSGCCFRDR KYATGFRTNR ATTSGYWKAT GKDRTVVDPA TQEVVGMRKT  60
LVFYRNRAPN GIKTGWIMHE FRLETPHMPP KEDWVLCRVF HKSKEDDNMS SILVQYETIT  120
PPPSSLTLAS SSPTNQAMPH GGYNNRLASF SNSSMSTHQY HHHFNPTQQN ANSLMDLLHF  180
SRETNTNNTF LTQIGAKGDD AYGFLWDMDL TENSLEDGVA SNLDAIRFEV DNNNNNMVLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-221810282168NAC domain-containing protein 19
3swm_B2e-221810282168NAC domain-containing protein 19
3swm_C2e-221810282168NAC domain-containing protein 19
3swm_D2e-221810282168NAC domain-containing protein 19
3swp_A2e-221810282168NAC domain-containing protein 19
3swp_B2e-221810282168NAC domain-containing protein 19
3swp_C2e-221810282168NAC domain-containing protein 19
3swp_D2e-221810282168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN02496.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2362240.0AC236224.2 Glycine max clone GM_WBc0124O13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028217415.11e-167protein CUP-SHAPED COTYLEDON 3-like
TrEMBLA0A445FHG81e-166A0A445FHG8_GLYSO; NAC domain-containing protein 21/22
STRINGGLYMA19G34881.11e-166(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43813359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-52NAC domain containing protein 74
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]