PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN02513.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 128aa    MW: 14167.4 Da    PI: 11.7616
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN02513.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.42.7e-11445751
         AP2  7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                r+++ +g++vAe rdp+ ng   r++ g f+tae Aa a+++a+ 
  KHN02513.1  4 RRRP-WGKFVAEKRDPTRNG--VRVWTGAFDTAEAAALAYDQAAF 45
                5566.*******99997786..*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.268157IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-16458IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-21457IPR001471AP2/ERF domain
SMARTSM003807.1E-22463IPR001471AP2/ERF domain
PfamPF008472.8E-7445IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MRSRRRPWGK FVAEKRDPTR NGVRVWTGAF DTAEAAALAY DQAAFLTRGV LATLNFSVQV  60
VMESLQNMGF KASKNDLSPL LALKRMHVMR TKSRANRSGS KKVKRACSNG KLDTTTQNVL  120
VLEGLGPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-214601066ATERF1
3gcc_A9e-214601066ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN02513.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0958431e-141BT095843.1 Soybean clone JCVI-FLGm-15O23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241445.12e-69ethylene-responsive transcription factor 15-like
RefseqXP_028225580.12e-69ethylene-responsive transcription factor 15-like
SwissprotQ8VYM06e-33ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A445FHE89e-88A0A445FHE8_GLYSO; Ethylene-responsive transcription factor 15
TrEMBLK7MYP19e-88K7MYP1_SOYBN; Uncharacterized protein
STRINGGLYMA19G34661.11e-88(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.14e-22ethylene response factor 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]