PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN02539.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 210aa    MW: 23112.4 Da    PI: 9.9384
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN02539.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.4e-1059103554
                 HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                 h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  KHN02539.1  59 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 103
                 99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-1552113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.1254103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-1556113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-759103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-1160109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MKPEEASASG KRFRDDVVDN RAKNVFHGQP MPTTMPAAPH PPAIRPRVRA RRGQATDPHS  60
IAERLRRERI AERIRALQEL VPSVNKTDRA AMLDEIVDYV KFLRLQVKVL SMSRLGGAGA  120
VAPLVTDIPL SSVEEEGGEG ARNRPAWDKW SNDGTERQVA KLMEENVGAA MQFLQSKALC  180
IMPISLASAI YQSQPPDTSS IVKPETNPPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16368RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN02539.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554277.11e-152transcription factor UNE12
RefseqXP_028218401.11e-152transcription factor UNE12-like
SwissprotO227681e-112UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A445FHB11e-151A0A445FHB1_GLYSO; Transcription factor UNE12
TrEMBLI1N9L81e-151I1N9L8_SOYBN; Uncharacterized protein
STRINGGLYMA19G34360.11e-152(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.35e-91bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]