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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | KHN02784.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family | M-type_MADS | ||||||||
| Protein Properties | Length: 72aa MW: 8257.47 Da PI: 9.861 | ||||||||
| Description | M-type_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 96.7 | 1e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ie+++ rqvtfskRr g+lKKA+ELSvLCdaevavi+fs++g+lye+ss
KHN02784.1 9 KKIEDTTSRQVTFSKRRSGLLKKAYELSVLCDAEVAVIVFSQNGRLYEFSS 59
78***********************************************96 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50066 | 31.763 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 1.1E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 2.49E-29 | 3 | 61 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.3E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.08E-36 | 3 | 72 | No hit | No description |
| Pfam | PF00319 | 1.9E-28 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.3E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.3E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 72 aa Download sequence Send to blast |
MVRGKVQLKK IEDTTSRQVT FSKRRSGLLK KAYELSVLCD AEVAVIVFSQ NGRLYEFSSS 60 EYVFLHYSNF SA |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1tqe_P | 7e-21 | 1 | 71 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 7e-21 | 1 | 71 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 7e-21 | 1 | 71 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 7e-21 | 1 | 71 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_A | 7e-21 | 1 | 71 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 7e-21 | 1 | 71 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 7e-21 | 1 | 71 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 7e-21 | 1 | 71 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 7e-21 | 1 | 71 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 7e-21 | 1 | 71 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | KHN02784.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020232325.1 | 2e-39 | MADS-box protein AGL42 | ||||
| Swissprot | Q9FIS1 | 1e-29 | AGL42_ARATH; MADS-box protein AGL42 | ||||
| TrEMBL | A0A371I2H5 | 3e-39 | A0A371I2H5_MUCPR; MADS-box protein AGL42 (Fragment) | ||||
| STRING | GLYMA10G38541.1 | 2e-34 | (Glycine max) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF119 | 33 | 360 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G62165.4 | 4e-32 | AGAMOUS-like 42 | ||||
| Publications ? help Back to Top | |||
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