PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN03099.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 458aa    MW: 52448.6 Da    PI: 5.0508
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN03099.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS153.32.3e-47854533374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 + L +  ea+ +g+++l + +L  +++ +sp  +p++R+a+y+ + +++r  +        +  ++++   s++  aa+k+f++  P  k++h++aN a
  KHN03099.1  85 HMLEALGEAIYQGKKALKEVILRCMRQKVSPLYEPLERVAFYLCQDMETRQDD--------FYLKQEA---SKNFEAAFKAFYQGLPHGKVAHFVANLA 172
                 667778899****************************************9988........5555655...77888999******************** PP

        GRAS 102 Ileavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrledl..ele 192
                 Ilea+ ++ e +Hi+Dfd+++G QWp+L++++a+ +    +l++T++++ e+g     s  + ee+++ L++ A++ ++++  +    k++e++  el+
  KHN03099.1 173 ILEALPHDsEVIHIVDFDMGEGSQWPPLIESIATLR---KTLKLTAIKRGEEGsevvsSPWKFEEIKRVLHEHARSRDLKLMVEE---KEMEEVisELK 265
                 *****9885777*********************864...56********9988889988899*****************998776...56666622333 PP

        GRAS 193 eLrvkp......gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk.vvvvveqe.adh..nsesFlerflealeyysalfdsleaklpres.e 280
                 +++  +      ++  a n+++ l ++   +++++ + +e+L+l+ks  ++ +v++ +   ++   n+ +F+  f + l +y al++s+e+ +p++  +
  KHN03099.1 266 KIN--KsvgsgkRDFYAFNCMVGLPHMG--RGTSRRHATEFLNLIKSCGSRgIVTFGDARvCEKleNDLEFVSFFERHLLHYKALLESIESHFPNHFtD 360
                 443..23355669**************9..66666668**********9985788888775554579**************************999779 PP

        GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374
                 +r+ +E  +++++i+++   ++ e  e +e+ e+  +   + G++ ++ls+ + +++  +l+  ++  y+     +++++l+l Wk+ pLv vS Wr
  KHN03099.1 361 ARSAMECLFVAPNISSLAWLQKWE--EIKEESESYFQ--ADIGLEGLRLSNAILMEVGEMLSGSEQGSYQARiegQNDNQLTLEWKGTPLVRVSTWR 453
                 9****************9999999..66666665544..579********************99966677665577899*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.92357430IPR005202Transcription factor GRAS
PfamPF035147.9E-4585453IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MFTNEYDHFL HYQIEKDTLQ LPTLMDVYGL SMDCDDFDPI LRDHQESEGD WSPTPSLDSD  60
LSSNQKALTL PQQGMEIENQ VSLPHMLEAL GEAIYQGKKA LKEVILRCMR QKVSPLYEPL  120
ERVAFYLCQD METRQDDFYL KQEASKNFEA AFKAFYQGLP HGKVAHFVAN LAILEALPHD  180
SEVIHIVDFD MGEGSQWPPL IESIATLRKT LKLTAIKRGE EGSEVVSSPW KFEEIKRVLH  240
EHARSRDLKL MVEEKEMEEV ISELKKINKS VGSGKRDFYA FNCMVGLPHM GRGTSRRHAT  300
EFLNLIKSCG SRGIVTFGDA RVCEKLENDL EFVSFFERHL LHYKALLESI ESHFPNHFTD  360
ARSAMECLFV APNISSLAWL QKWEEIKEES ESYFQADIGL EGLRLSNAIL MEVGEMLSGS  420
EQGSYQARIE GQNDNQLTLE WKGTPLVRVS TWRKIKGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-1410645326375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN03099.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028223427.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A445L7K60.0A0A445L7K6_GLYSO; Nodulation-signaling pathway 2 protein
STRINGGLYMA03G06530.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.15e-19GRAS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]