PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN03165.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 74aa    MW: 8256.62 Da    PI: 10.9769
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN03165.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.32.4e-29958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krienk+nrqvtfskRrng+ KKA+ELSvLCdaeva++ifs +gk ++++
  KHN03165.1  9 KRIENKINRQVTFSKRRNGLVKKAKELSVLCDAEVALVIFSARGKPFTFP 58
                79**********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.6161IPR002100Transcription factor, MADS-box
CDDcd002651.64E-35257No hitNo description
SuperFamilySSF554551.96E-29261IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-29323IPR002100Transcription factor, MADS-box
PfamPF003193.4E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-293859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FSKRRNGLVK KAKELSVLCD AEVALVIFSA RGKPFTFPDD  60
AERSLSLSLS FATS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-18157157MEF2C
5f28_B4e-18157157MEF2C
5f28_C4e-18157157MEF2C
5f28_D4e-18157157MEF2C
6byy_A3e-18157157MEF2 CHIMERA
6byy_B3e-18157157MEF2 CHIMERA
6byy_C3e-18157157MEF2 CHIMERA
6byy_D3e-18157157MEF2 CHIMERA
6bz1_A4e-18157157MEF2 CHIMERA
6bz1_B4e-18157157MEF2 CHIMERA
6bz1_C4e-18157157MEF2 CHIMERA
6bz1_D4e-18157157MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN03165.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551643.16e-35agamous-like MADS-box protein AGL6 isoform X1
RefseqXP_028212482.16e-35agamous-like MADS-box protein AGL6
SwissprotP293868e-28AGL6_ARATH; Agamous-like MADS-box protein AGL6
SwissprotQ8LLR27e-28MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A0B2P1M02e-45A0A0B2P1M0_GLYSO; Agamous-like MADS-box protein AGL6
STRINGGLYMA18G45761.12e-34(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.31e-30MIKC_MADS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  5. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  6. Dreni L,Zhang D
    Flower development: the evolutionary history and functions of the AGL6 subfamily MADS-box genes.
    J. Exp. Bot., 2016. 67(6): p. 1625-38
    [PMID:26956504]