PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN03372.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YB

Protein Properties

Length: 111aa MW: 12484.2 Da PI: 4.9063

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN03372.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	151.8	1.3e-47	20	107	2	88
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv.ylk 88 reqdr+lPianv++imk++lP nakisk++ket+qecvsefisfvtseas+kc++e+rkt+ngdd++wal++lGf+dy+epl+ yl+ KHN03372.1 20 REQDRLLPIANVGKIMKQILPPNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGSLGFDDYAEPLRSwYLH 107 89********************************************************************************752666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.8E-45	17	103	IPR009072	Histone-fold
SuperFamily	SSF47113	2.26E-34	22	104	IPR009072	Histone-fold
Pfam	PF00808	1.8E-27	25	89	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.2E-13	53	71	No hit	No description
PROSITE pattern	PS00685	0	56	72	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	5.2E-13	72	90	No hit	No description
PRINTS	PR00615	5.2E-13	91	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MMDNVGGSSS NIAENSGIIR EQDRLLPIAN VGKIMKQILP PNAKISKESK ETMQECVSEF 60 ISFVTSEASE KCRKERRKTV NGDDICWALG SLGFDDYAEP LRSWYLHPFI D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	3e-40	19	104	1	86	Transcription factor HapC (Eurofung)
4g92_B	3e-40	19	104	1	86	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN03372.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014625184.1	3e-70	nuclear transcription factor Y subunit B-5
Refseq	XP_028208837.1	3e-70	nuclear transcription factor Y subunit B-5-like
Swissprot	O82248	5e-49	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A445G0U3	7e-69	A0A445G0U3_GLYSO; Nuclear transcription factor Y subunit B-5
TrEMBL	I1MRH0	7e-69	I1MRH0_SOYBN; Uncharacterized protein
STRING	GLYMA17G02810.1	1e-69	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	2e-51	nuclear factor Y, subunit B5

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]