PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN03379.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 342aa    MW: 36794.9 Da    PI: 8.77
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN03379.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.1e-122348227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                +++ C +++rtG+C yG rC+F+H++
  KHN03379.1 23 DEADCIYYLRTGFCGYGTRCRFNHPR 48
                6799********************96 PP
2zf-CCCH36.95.9e-127094327
                S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                ++ C++f+rtG Ck+G +Ck++H++
  KHN03379.1 70 QPVCQYFMRTGLCKFGVSCKYHHPR 94
                689********************96 PP
3zf-CCCH36.39.6e-12117140427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                 ++C+++ +tG+Ck+G++CkF+H++
  KHN03379.1 117 KECSYYVKTGQCKFGATCKFHHPQ 140
                 68********************97 PP
4zf-CCCH36.86.7e-12281306227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C+++++tG+Ck+G +C+++H+p
  KHN03379.1 281 DQPECHHYMKTGECKFGLSCRYHHPP 306
                 689*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.8542149IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-42148IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-72250IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-92348IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-52748IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.846795IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-66794IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-97094IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-67095IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-57294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.07113141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6114141IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5115140IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-9117140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4119139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666279307IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4279306IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9281306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-5282308IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016740Molecular Functiontransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDRGQSSWQL GLAGAESYPM RPDEADCIYY LRTGFCGYGT RCRFNHPRDR AAVIGAAART  60
GGEFPERVGQ PVCQYFMRTG LCKFGVSCKY HHPRQAAGTA TPVPLNYYGY PLRVAEKECS  120
YYVKTGQCKF GATCKFHHPQ PAGVQALAPS PVPPVSPLPV PVPSPMYPTV QIPSGPSQQQ  180
YGVLVARPPM LPGSVVQGPY GPMVVSPAMV PFSGWSPYQA PATNPVLPSS NTSNAGSTQF  240
YGISQLPSSP ATFTGPYQPS GSSIGPSGAS QKEHPFPERP DQPECHHYMK TGECKFGLSC  300
RYHHPPDKSA PKATVTLSPV GLPLRPVIST SLFFGALYFG CD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN03379.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-121AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550189.10.0zinc finger CCCH domain-containing protein 58
RefseqXP_028211017.10.0zinc finger CCCH domain-containing protein 58-like
SwissprotQ6NPN31e-120C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A445G0U80.0A0A445G0U8_GLYSO; Zinc finger CCCH domain-containing protein 58
TrEMBLK7MJK60.0K7MJK6_SOYBN; Uncharacterized protein
STRINGGLYMA17G02720.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-117C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]