PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN03388.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 203aa    MW: 22431.1 Da    PI: 9.889
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN03388.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.91.6e-0757100855
                 HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +Er RR+++ + f +L++ +P  +     +  +   i  ++++YIk+L+
  KHN03388.1  57 VERERRSKMTQMFTQLQTTVPGvL-----PQATREVIINETIKYIKELE 100
                 7*********************88.....678899***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.4484999IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.001555105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-1156123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1157115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.95E-557100No hitNo description
PfamPF000104.1E-557100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MQGHAETNNS IMAPLSQIPP SSSLHPSNIA ETGNIYTTTS RKRVKKMDHT NCESLNVERE  60
RRSKMTQMFT QLQTTVPGVL PQATREVIIN ETIKYIKELE MKMQKLEELK ESMKEGSILL  120
ACGNNNMNCS VTVSVSANVA FFGIQSLPRS GLVSVIMKVF CKHRAEILAA NVSVNNGKLI  180
LAITAMVQNG GVVENIRRQI LSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN03388.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006600339.11e-147uncharacterized protein LOC102663211
RefseqXP_028208646.11e-147uncharacterized protein LOC114391851
TrEMBLA0A445G0R71e-137A0A445G0R7_GLYSO; Uncharacterized protein
TrEMBLK7MJK21e-137K7MJK2_SOYBN; Uncharacterized protein
STRINGGLYMA17G02615.11e-138(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143301314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.18e-08bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]