PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN03468.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 180aa    MW: 20992.4 Da    PI: 10.0343
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN03468.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.66.7e-232269249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                + e  sn+qvtfskRr+g++KKA+EL++LC+a va+i+fs+ +kl+ +
  KHN03468.1 22 KLEKASNKQVTFSKRRTGLFKKASELCILCNAYVAIIVFSPADKLFCF 69
                56889***************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.8E-321372IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.7631373IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-271483IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-211535IPR002100Transcription factor, MADS-box
PfamPF003192.0E-222369IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-213550IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-215071IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MDMFKQNQKK KNTGRKKIEI KKLEKASNKQ VTFSKRRTGL FKKASELCIL CNAYVAIIVF  60
SPADKLFCFG HPDIDSIIGR YLKGDNNAEF EPAAKSSKEK SVSYEECNRQ YEAATKKLEL  120
EKKNLAQTEI LAKGWNRRWW KDPIDQMSEQ QLEQFMMSIY ELRKKLTERT GELMMLGTMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-161481269Myocyte-specific enhancer factor 2B
1tqe_Q2e-161481269Myocyte-specific enhancer factor 2B
1tqe_R2e-161481269Myocyte-specific enhancer factor 2B
1tqe_S2e-161481269Myocyte-specific enhancer factor 2B
6byy_A2e-161481269MEF2 CHIMERA
6byy_B2e-161481269MEF2 CHIMERA
6byy_C2e-161481269MEF2 CHIMERA
6byy_D2e-161481269MEF2 CHIMERA
6c9l_A2e-161481269Myocyte-specific enhancer factor 2B
6c9l_B2e-161481269Myocyte-specific enhancer factor 2B
6c9l_C2e-161481269Myocyte-specific enhancer factor 2B
6c9l_D2e-161481269Myocyte-specific enhancer factor 2B
6c9l_E2e-161481269Myocyte-specific enhancer factor 2B
6c9l_F2e-161481269Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN03468.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028210616.11e-132agamous-like MADS-box protein AGL62
TrEMBLA0A445G0C01e-131A0A445G0C0_GLYSO; Agamous-like MADS-box protein AGL62
STRINGGLYMA17G01771.11e-131(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-32AGAMOUS-like 62
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]