PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN03668.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 179aa    MW: 20028.9 Da    PI: 9.6973
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN03668.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS169.13.6e-522179204374
        GRAS 204 VnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres....eerikvErellgreivnv 297
                 Vn++++l +++desvs e++rde+L+ vk+l P+vv+vveqe++ n+++Fl+r++e+l+yy al++s+ ++++++++    ++r+ +E+  l+r++ n 
  KHN03668.1   2 VNFAFKLNKIPDESVSPENPRDELLRRVKRLAPRVVTVVEQEINGNTAPFLARVAETLSYYGALLESIeATTVGKDNsinnSDRVRLEEG-LSRKLHNS 99 
                 9*******************************************************************77788887778879999****9.******** PP

        GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk...sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 vaceg++r+er+e ++kWr+r+++aGF+  pls+++++++k+ l   +   + g +v+ee+g +++gW++r+L+++SaWr
  KHN03668.1 100 VACEGRDRVERCEVFGKWRARMSMAGFELKPLSQSMVESIKARLISANnrvNSGLTVKEENGGICFGWMGRTLTVASAWR 179
                 *************************************99887664443236789*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.0361156IPR005202Transcription factor GRAS
PfamPF035141.2E-492179IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MVNFAFKLNK IPDESVSPEN PRDELLRRVK RLAPRVVTVV EQEINGNTAP FLARVAETLS  60
YYGALLESIE ATTVGKDNSI NNSDRVRLEE GLSRKLHNSV ACEGRDRVER CEVFGKWRAR  120
MSMAGFELKP LSQSMVESIK ARLISANNRV NSGLTVKEEN GGICFGWMGR TLTVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-162179205375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN03668.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014617163.11e-126scarecrow-like protein 8
RefseqXP_028181175.11e-125scarecrow-like protein 8
SwissprotQ9FYR71e-79SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A0B2P7M31e-127A0A0B2P7M3_GLYSO; Scarecrow-like protein 8
TrEMBLA0A0R0I7X71e-125A0A0R0I7X7_SOYBN; Uncharacterized protein
TrEMBLA0A445J0J71e-123A0A445J0J7_GLYSO; Scarecrow-like protein 8
STRINGGLYMA09G24740.11e-125(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.15e-82SCARECROW-like 8
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]