PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN03738.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 224aa    MW: 25270.6 Da    PI: 8.6738
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN03738.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.7e-062747121
                EEETTTTEEESSHHHHHHHHH CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHir 21
                ++C++C+k F r+ nL+ H r
  KHN03738.1 27 FVCEICNKGFQRNQNLQLHRR 47
                89*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-52647IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.22E-52748No hitNo description
PROSITE profilePS501579.5982747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDEIHVTDPN AEVIALSPTT LMATNRFVCE ICNKGFQRNQ NLQLHRRGRN PPWKLRQRGS  60
NELMKKRVYV CPEPSCVHHN PARALGDSTG IKKITADNMV KRNGSVTNAL EDMLSNLTGR  120
PTRKHVALGN TNVIGEPYFP SDHNEGLMKN VEQEIGTGNS SLVHDFLGVG GATSRVHEPQ  180
NQKQQQQRLE LDTLTHQRLQ IMNHFHHHLP HGDSATMEKS IWDI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN03738.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-142AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028184244.11e-101protein indeterminate-domain 12-like
TrEMBLA0A445IH881e-167A0A445IH88_GLYSO; Protein indeterminate-domain 11
STRINGGLYMA10G02501.16e-66(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.11e-45indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]