PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN03748.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CO-like
Protein Properties Length: 348aa    MW: 38852.3 Da    PI: 6.6887
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN03748.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.61.9e-061154239
    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                ++r+C+ +++  + l+C  ++  lC  C  + H +       Ht+
  KHN03748.1 11 KQRTCDYCGDFTALLYCSADSAKLCFFCDRKVH-SpnqlfskHTR 54
                789*******99*********************.43667777775 PP
2zf-B_box17.39.9e-065599342
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvpl 42
                ++ C+ +++ +++  C   ++ lC++C  e+Hk      H+++pl
  KHN03748.1 55 AQLCDSCGDSPASMLCSAENSVLCHNCDCEKHKHlasevHQRKPL 99
                689*****************************8788899988875 PP
3CCT64.23.9e-22302345144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 R+ allRY+eK+ktR+++K+irYesRK++AesR R+KGrFvk +
  KHN03748.1 302 RDSALLRYREKKKTRRYDKHIRYESRKVRAESRMRIKGRFVKDE 345
                 899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.9E-121057IPR000315B-box-type zinc finger
PROSITE profilePS501199.8831057IPR000315B-box-type zinc finger
PfamPF006431.6E-51154IPR000315B-box-type zinc finger
CDDcd000211.11E-51357No hitNo description
PROSITE profilePS5011910.5235399IPR000315B-box-type zinc finger
CDDcd000213.09E-65799No hitNo description
SMARTSM003360.545899IPR000315B-box-type zinc finger
PROSITE profilePS5101714.991302344IPR010402CCT domain
PfamPF062031.1E-16302344IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MMSGSPSPNS KQRTCDYCGD FTALLYCSAD SAKLCFFCDR KVHSPNQLFS KHTRAQLCDS  60
CGDSPASMLC SAENSVLCHN CDCEKHKHLA SEVHQRKPLE GFSGCPSVTE LLTILGVSEK  120
SLLSNEGTSQ IDYDLSDLHV WSAPSVNGLE YLITSTASSH KNRKSAFGRH KEEILSQLRE  180
LIKLEPDLIH GEVDAERQGQ FGNLPTGFER DVEASMFPSY EAGVFCWHGE SSDPTNQIVP  240
SDTSSLRDFG EVVSAEDGSF TIPGTGTQAN FNNEGKPSNS FNSENLSPTP KATPYELTSH  300
ERDSALLRYR EKKKTRRYDK HIRYESRKVR AESRMRIKGR FVKDETQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN03748.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028183266.10.0zinc finger protein CONSTANS-LIKE 13-like
TrEMBLA0A445IGT20.0A0A445IGT2_GLYSO; Zinc finger protein CONSTANS-LIKE 13
STRINGGLYMA10G02621.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-69B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]