PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN03860.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 219aa    MW: 24704.5 Da    PI: 7.0545
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN03860.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000243658123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y C+ C++ F++   L  H+++H
  KHN03860.1 36 YACSFCKREFRSAQALGGHMNVH 58
                89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.28E-63362No hitNo description
Gene3DG3DSA:3.30.160.608.6E-43461IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1983663IPR007087Zinc finger, C2H2
SMARTSM003550.00923658IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-63659IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEGNYLNRNS TTPQREDHSF GFEEHPWGTS WPARNYACSF CKREFRSAQA LGGHMNVHRR  60
DRARLRSSLS SWVSECPKPN PNTKPNNNNP TLLPPPPSSS PYPLLSDEPL NYAHPSPLCS  120
PCLTLSSSPS PASTSGDKKP RLTPSHHQFP LLSPQSSQIK MMSENTRSDF SADEEMKGYV  180
EEEEHKGFQK NEQNITLELG IGLLKHQEEK LDLELRLGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-113158229superman protein
2l1o_A2e-113158229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN03860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006588671.11e-161transcriptional regulator SUPERMAN
RefseqXP_028182507.11e-161transcriptional regulator SUPERMAN-like
TrEMBLA0A445IHB61e-159A0A445IHB6_GLYSO; Transcriptional regulator SUPERMAN
TrEMBLI1L8B91e-159I1L8B9_SOYBN; Uncharacterized protein
STRINGGLYMA10G03990.11e-160(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-14C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]