PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN03861.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 222aa    MW: 25582.9 Da    PI: 6.6749
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN03861.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000443355123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C  C++ F++   L  H++ H
  KHN03861.1 33 FECVFCKRGFNTAQALGGHMNIH 55
                89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.59E-53159No hitNo description
PfamPF139121.9E-53357IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.2213360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEFSYQEDSS KSSSNEIDRS SEQNDETGTG RSFECVFCKR GFNTAQALGG HMNIHRKARA  60
NNSKAKPNFP PSSSSKVDHH ESNNYANPTY LTRGNHYSST LPDHREVDDV NYNYYHQLYF  120
PSPASGAKSP SHVQYSSEAL CVENQRDPHL PFGQDWRQRG LSLYTNPLCV HENKDKIENN  180
SEEDDLDLEL RLGWKQKEAR FLAWRLLQGR LQVRVSDEGR YF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN03861.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150412e-80AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028183892.11e-142zinc finger protein 10-like
TrEMBLA0A445IHB11e-141A0A445IHB1_GLYSO; Uncharacterized protein
STRINGGLYMA10G04010.21e-139(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.13e-13C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]