PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN03875.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 211aa    MW: 23525.2 Da    PI: 5.72
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN03875.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-1872121355
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y GVr ++ +g+++AeIrd + ng  +r++lg+f+tae Aa a+++a+ +++g
  KHN03875.1  72 YIGVRKRP-WGKFAAEIRDTTRNG--TRVWLGTFDTAEAAALAYDQAAFSMRG 121
                 89******.**********54465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-3671135IPR001471AP2/ERF domain
PfamPF008471.7E-1371121IPR001471AP2/ERF domain
PROSITE profilePS5103222.48471129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-3071130IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-2272130IPR016177DNA-binding domain
CDDcd000186.35E-2072130No hitNo description
PRINTSPR003679.6E-107283IPR001471AP2/ERF domain
PRINTSPR003679.6E-1095111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MKQQTAAEHD PYSSEVLFDS MSSTNAVLDP IHDSLSFDMV DFSTAPTTEG NHNDEAKQLV  60
VKSEGQNKER SYIGVRKRPW GKFAAEIRDT TRNGTRVWLG TFDTAEAAAL AYDQAAFSMR  120
GQSAVLNFPV KRVKESLQEI QYSCFFNGSS SPALALKERH CIQRKLSSKG KKCKGKETSE  180
SVVVLEDLGV DYLEQLLSLS DQSESPSYFN Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2870131162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A4e-28721291572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN03875.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028184276.11e-152ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y93e-51ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A445II241e-149A0A445II24_GLYSO; Ethylene-responsive transcription factor 1B
STRINGGLYMA10G04170.21e-126(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.19e-36ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]