PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN04143.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 132aa    MW: 14482.8 Da    PI: 11.83
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN04143.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.85.6e-08112132121
                 S---SHHHHHHHHHHHHHHHH CS
      SRF-TF   1 krienksnrqvtfskRrngil 21 
                 k+i+n + rqvtfskRr g++
  KHN04143.1 112 KKIDNATARQVTFSKRRRGLF 132
                 68******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.984104132IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-9104132IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-8106126IPR002100Transcription factor, MADS-box
PfamPF003192.2E-6113132IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-8126132IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MALVSPRTTW PSRRLASPRC GTRATPATCT SSTSPRPCVT ALPPPAWFPS ASTLLASAMP  60
SPWALVACAK ASSPGTSLPT TSRPSWQRSD ARYYHCHEPW VVLMAREKVQ IKKIDNATAR  120
QVTFSKRRRG LF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN04143.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5944036e-98FJ594403.1 Glycine max dihydroxyacid dehydratase mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028215767.13e-84uncharacterized protein LOC114397913
RefseqXP_028215768.13e-84uncharacterized protein LOC114397913
RefseqXP_028215769.13e-84uncharacterized protein LOC114397913
TrEMBLA0A0B2P8Z01e-87A0A0B2P8Z0_GLYSO; MADS-box protein SVP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.22e-14MIKC_MADS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]