PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN04214.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 644aa    MW: 72317.5 Da    PI: 6.2214
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN04214.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.34.5e-171421556
                HHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox 15 LeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                +e+lF+++++p++++r++L+++lgL  rqVk+WFqNrR++ k
  KHN04214.1  1 MEALFKESPHPDEKQRQKLSQQLGLAPRQVKFWFQNRRTQIK 42
                79************************************9877 PP
2START224.63e-701593822206
                 HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 +a++a++el+k+a  +ep+Wv+s+    +++n+de++++fe +++        +ea+r++ vv+m+l++l++++ld++ qW+e+++    ka+t++vi+
  KHN04214.1 159 IANRATEELIKMANMGEPLWVRSVetgrDILNYDEYVKEFEVENSgserpkTFIEASRETEVVFMDLPRLLQSFLDVN-QWKEMFPclisKAATVDVIC 256
                 6899************************************888889********************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                 +g      ga+qlm+aelq+l+p+vp R+++fvR+ +ql++++w+ivdvS+d  +++  ++s+v+++++pSg++ie+ksngh+kv+wveh +++++++h
  KHN04214.1 257 NGegsnrnGAVQLMFAELQMLTPMVPtREVYFVRCGKQLSDEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSTIH 354
                 ********************************************************98.9*************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                  ++r +v+sgla+ga++w +tlq qce+
  KHN04214.1 355 TMYRTIVNSGLAFGARHWIETLQLQCER 382
                 **************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.018144IPR001356Homeobox domain
CDDcd000861.55E-13142No hitNo description
SuperFamilySSF466891.5E-13149IPR009057Homeodomain-like
PfamPF000462.3E-14142IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.2E-15152IPR009057Homeodomain-like
SMARTSM003893.1E-6148IPR001356Homeobox domain
PROSITE patternPS0002701942IPR017970Homeobox, conserved site
PROSITE profilePS5084838.007149385IPR002913START domain
SuperFamilySSF559615.63E-32151382No hitNo description
CDDcd088756.70E-108153381No hitNo description
SMARTSM002341.8E-71158382IPR002913START domain
PfamPF018529.9E-56159382IPR002913START domain
Gene3DG3DSA:3.30.530.202.4E-4235377IPR023393START-like domain
SuperFamilySSF559616.04E-13412632No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MEALFKESPH PDEKQRQKLS QQLGLAPRQV KFWFQNRRTQ IKAIQERHEN SLLKTELDRL  60
REENKAMRET INKSCCPNCG MVTATIDASM STEEKQLLIE NAKLKAEVEK LRTALGKFSP  120
RTTSPTTSSA GHHDEEENRS SLDFYNGIFG LDKSRIMDIA NRATEELIKM ANMGEPLWVR  180
SVETGRDILN YDEYVKEFEV ENSGSERPKT FIEASRETEV VFMDLPRLLQ SFLDVNQWKE  240
MFPCLISKAA TVDVICNGEG SNRNGAVQLM FAELQMLTPM VPTREVYFVR CGKQLSDEQW  300
AIVDVSIDKV EDNIDASLVK CRKRPSGCII EDKSNGHCKV IWVEHLECQK STIHTMYRTI  360
VNSGLAFGAR HWIETLQLQC ERLVFYMATN VPMKDSTGVA TLAGRKSILK LAQRMTWSFC  420
HAVGASSFHT WTKVTSKTGE DIRISSRKNL NEPGEPLGVI LCAVSSVWLP VSPNVLFDFL  480
RDEARRNEWD IMSSGGSVQS IANLAKGKDR GNVVNIQKII QSKDNSVWIL QDSCTSAYES  540
MVVYAPVEFA GIQSVLTGCD SSNLAILPSG FSILPDGIEG RPLVITSRQE EKYTEGGSLF  600
TMAFQILANP SPTTKLTMES VESVNNLVSC TLRNIRTSLQ CEDG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN04214.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311640.0KT031164.1 Glycine max clone HN_CCL_123 homeodomain/HOMEOBOX transcription factor (Glyma07g02220.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028238937.10.0homeobox-leucine zipper protein GLABRA 2-like
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A0B2P9H00.0A0A0B2P9H0_GLYSO; Homeobox-leucine zipper protein GLABRA 2
STRINGGLYMA07G02220.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]